View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14969_high_38 (Length: 257)

Name: NF14969_high_38
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14969_high_38
NF14969_high_38
[»] chr7 (14 HSPs)
chr7 (25-241)||(22831794-22832006)
chr7 (16-154)||(22859122-22859261)
chr7 (13-145)||(22806067-22806199)
chr7 (13-141)||(22842930-22843059)
chr7 (25-144)||(22810426-22810543)
chr7 (89-151)||(22894792-22894854)
chr7 (96-151)||(22841490-22841545)
chr7 (41-152)||(22886284-22886396)
chr7 (89-154)||(22816032-22816095)
chr7 (182-231)||(22843086-22843135)
chr7 (91-151)||(22899055-22899113)
chr7 (182-240)||(22816249-22816307)
chr7 (15-52)||(22815973-22816010)
chr7 (91-151)||(22840890-22840950)
[»] chr1 (1 HSPs)
chr1 (59-150)||(21149819-21149910)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 22831794 - 22832006
Alignment:
Q  25 cacatttgaagcacaaattttctttccatctgtagtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattggatatgtgaaat 124  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  22831794 cacatttgaaccacaatttttctttccatctgtagttgtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaat 22831893  T
Q  125 taaaacatcaatgtcgtctaaattctta-aagtgnnnnnnnnnnnnnnnnnnnnncatacttgaatatgtggacttgacaagctactattgattatgctg 223  Q
    |||||||||||||||||||||||||||| |||||                     || |||||||| ||||||||||||||| |||||||||||||||||    
T  22831894 taaaacatcaatgtcgtctaaattcttaaaagtgtttttttttttctttt-----caaacttgaatgtgtggacttgacaagttactattgattatgctg 22831988  T
Q  224 caaatcaaatgatgaatg 241  Q
    ||||||||||||||||||    
T  22831989 caaatcaaatgatgaatg 22832006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 22859122 - 22859261
Alignment:
Q  16 aatgtgttacacatttgaagcacaaattttctttccatctgtagtagtgggggaatatttttcaacgtattcatatt--aagtgtttgatgctaaattgg 113  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |  |||||  ||||  ||||||| ||||||     
T  22859122 aatgtgttacacatttgaaccacaaattttctttccatctgtagtagtgggggaatgtttttcaacgtttatatattcgaagt-cttgatgcaaaattga 22859220  T
Q  114 atatgtgaaattaaaacatcaatgtcgtctaaattcttaaa 154  Q
    ||||||||||||||||||| ||||| |||||| ||||||||    
T  22859221 atatgtgaaattaaaacattaatgttgtctaatttcttaaa 22859261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 22806067 - 22806199
Alignment:
Q  13 atgaatgtgttacacatttgaagcacaaattttctttccatctgtagtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattg 112  Q
    |||||||||||||||||||||| |||||||||||||||||  ||||||||||||  ||| |||||||| || | ||||||||||||||||||||||||||    
T  22806067 atgaatgtgttacacatttgaaccacaaattttctttccaattgtagtagtgggtaaatgtttttcaatgtttacatattaagtgtttgatgctaaattg 22806166  T
Q  113 gatatgtgaaattaaaacatcaatgtcgtctaa 145  Q
     ||||||||||| || |||||| ||| ||||||    
T  22806167 aatatgtgaaatcaagacatcagtgttgtctaa 22806199  T

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Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 22842930 - 22843059
Alignment:
Q  13 atgaatgtgttacacatttgaagcacaaattttctttccatctgtagtagtgggggaat-atttttcaacgtattcatattaagtgtttgatgctaaatt 111  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||  |||  ||||||||  | | |||||||||||||||||||||||||    
T  22842930 atgaatgtgttacacatttgaaccacaaattttctttccaactgtagtagtgggtaaatgttttttcaatttttacatattaagtgtttgatgctaaatt 22843029  T
Q  112 ggatatgtgaaattaaaacatcaatgtcgt 141  Q
    | ||||||||||| |||||||| |||||||    
T  22843030 gaatatgtgaaatcaaaacatctatgtcgt 22843059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 22810426 - 22810543
Alignment:
Q  25 cacatttgaagcacaaattttctttccatctgtagtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattggatatgtgaaat 124  Q
    |||||||||| ||||  ||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||| |||||||||||| |||||||||||    
T  22810426 cacatttgaaccaca--ttttctttccatctgtagtagcgggggaatgtttttcaacgtttacatattaagtgttcgatgctaaattgaatatgtgaaat 22810523  T
Q  125 taaaacatcaatgtcgtcta 144  Q
    |||| |||||| ||||||||    
T  22810524 taaatcatcaaagtcgtcta 22810543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 22894792 - 22894854
Alignment:
Q  89 tattaagtgtttgatgctaaattggatatgtgaaattaaaacatcaatgtcgtctaaattctt 151  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  22894792 tattgagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttctt 22894854  T

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Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 22841490 - 22841545
Alignment:
Q  96 tgtttgatgctaaattggatatgtgaaattaaaacatcaatgtcgtctaaattctt 151  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  22841490 tgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttctt 22841545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 22886284 - 22886396
Alignment:
Q  41 attttctttccatctgtagtagtgggggaatatttttc-aacgtattcatattaagtgtttgatgctaaattggatatgtgaaattaaaacatcaatgtc 139  Q
    ||||| |||||| | ||||||||||| |||| |||||  ||| | | |||||||||||||||||||||||||| |||||||||||| ||  ||||||||     
T  22886284 attttttttccaacagtagtagtgggtgaatgtttttttaacatttacatattaagtgtttgatgctaaattgaatatgtgaaatttaattatcaatgtg 22886383  T
Q  140 gtctaaattctta 152  Q
     ||||| ||||||    
T  22886384 ttctaatttctta 22886396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 22816032 - 22816095
Alignment:
Q  89 tattaagtgtttgatgctaaattggatatgtgaaattaaaacatcaatgtcgtctaaattcttaaa 154  Q
    |||||||||||||||||||||||| |||  |||||||||||||||| |||| ||||| ||||||||    
T  22816032 tattaagtgtttgatgctaaattgaata--tgaaattaaaacatcagtgtcatctaatttcttaaa 22816095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 22843086 - 22843135
Alignment:
Q  182 acttgaatatgtggacttgacaagctactattgattatgctgcaaatcaa 231  Q
    |||||||| |||||||||||| || |||||||||||||||||||||||||    
T  22843086 acttgaatgtgtggacttgaccagttactattgattatgctgcaaatcaa 22843135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 22899055 - 22899113
Alignment:
Q  91 ttaagtgtttgatgctaaattggatatgtgaaattaaaacatcaatgtcgtctaaattctt 151  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||| |||| ||||||    
T  22899055 ttaagtgtttgat-ctaaattgaatatgtgaaatt-aaacatcaatgtcatctatattctt 22899113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 22816249 - 22816307
Alignment:
Q  182 acttgaatatgtggacttgacaagctactattgattatgctgcaaatcaaatgatgaat 240  Q
    |||||||| ||||| ||||||    |||||||||||||||||||||| |||||||||||    
T  22816249 acttgaatgtgtggccttgacctattactattgattatgctgcaaataaaatgatgaat 22816307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 22815973 - 22816010
Alignment:
Q  15 gaatgtgttacacatttgaagcacaaattttctttcca 52  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  22815973 gaatgtgttacacatttgaaccaccaattttctttcca 22816010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 22840890 - 22840950
Alignment:
Q  91 ttaagtgtttgatgctaaattggatatgtgaaattaaaacatcaatgtcgtctaaattctt 151  Q
    |||| |||||||||| ||| || |||| ||||||||||||||||||||  ||||| |||||    
T  22840890 ttaaatgtttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttctt 22840950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 21149910 - 21149819
Alignment:
Q  59 gtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattggatatgtgaaattaaaacatcaatgtcgtctaaattct 150  Q
    |||||||| |||| |||||||| || | | | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  21149910 gtagtgggtgaatgtttttcaatgtttacgtgttaagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttct 21149819  T

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