View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_high_4 (Length: 560)
Name: NF14969_high_4
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 474061 - 474603
Alignment:
| Q |
1 |
gatatataagaaagagcttgcacttgcatttttgctgctaacggctgcaattaggagcctgttatcggcgcaagggatgcatttctactacttattattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474061 |
gatatataagaaagagcttgcacttgcatttttgctgctaacggctgcaattaggagcctgttatcggcgcaagggatgcatttctactacttattattc |
474160 |
T |
|
| Q |
101 |
caaggtgtgtcgttcctccttgtaggtttggatttaattggagaacaaatgagctagcaggtcggaatgaaaaggacgtgtaaattagaaaattgatggt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474161 |
caaggtgtgtcgttcctccttgtaggtttggatttaattggagaacaaatgagctagcaggtcggaatgaaaaggacgtgtaaattagaaaattgatggt |
474260 |
T |
|
| Q |
201 |
tatacagataaataattgaagaggacgaccgatatagattgctgctagacagtctgttttggcagttatattcaatgttcctgaaaatggctcgggtaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474261 |
tatacagataaataattgaagaggacgaccgatatagattgctgctagacagtctgttttggcagttatattcaatgttcctgaaaatggctcgggtaaa |
474360 |
T |
|
| Q |
301 |
atgctaaaagccgccgcgtgtcaaatcatagataagtttgtgaagtgtctttatagaaacttttctgttttcttgtcctttgattgttgtccacagtaca |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474361 |
atgctaaaagccgccgcgtgtcaaatcatagataagtttgtgaagtgtctttatagaaacttttctgttttcttgtcctttgattgttgtccacagtaca |
474460 |
T |
|
| Q |
401 |
ataatttta-nnnnnnncccttgtaagataaactgattcattttatcatttatctatgccacacttctgtatcacatttggttcatttgtatcttttgaa |
499 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
474461 |
ataattttattttttttcccttgtaagataaactgattcattttatcatttatctatgccacactactgtatcacatttggttcatttgtatctttcgaa |
474560 |
T |
|
| Q |
500 |
tgacatgtaaagattcattgcaacttagattctctgcagttaa |
542 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474561 |
tgacatgtaaagattcattgcaacttagattctctgcagttaa |
474603 |
T |
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