View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14969_high_40 (Length: 251)
Name: NF14969_high_40
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_high_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 26996099 - 26996322
Alignment:
| Q |
13 |
aatattatcaactcactaacaacaagaaatcagttaacctagctctctcactaggtactcaaattttggacgagaattactctttaggaaaatctctcac |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26996099 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctatcactaggtactcaaattttggacgagaaatactctttaggaaaatctctcac |
26996198 |
T |
|
| Q |
113 |
aactaaccaaattcttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26996199 |
aactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagccgctgatgtgttagttgacggtttttgttca |
26996298 |
T |
|
| Q |
213 |
agtaggtgtggaacccatggttct |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26996299 |
agtaggtgtggaacccatggttct |
26996322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 26721655 - 26721878
Alignment:
| Q |
13 |
aatattatcaactcactaacaacaagaaatcagttaacctagctctctcactaggtactcaaattttggacgagaattactctttaggaaaatctctcac |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
26721655 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcac |
26721754 |
T |
|
| Q |
113 |
aactaaccaaattcttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
212 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721755 |
aactaaccaaatccttaatctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
26721854 |
T |
|
| Q |
213 |
agtaggtgtggaacccatggttct |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26721855 |
agtaggtgtggaacccatggttct |
26721878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 26991404 - 26991627
Alignment:
| Q |
13 |
aatattatcaactcactaacaacaagaaatcagttaacctagctctctcactaggtactcaaattttggacgagaattactctttaggaaaatctctcac |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
26991404 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcac |
26991503 |
T |
|
| Q |
113 |
aactaaccaaattcttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
212 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26991504 |
aactaaccaaatccttaatctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
26991603 |
T |
|
| Q |
213 |
agtaggtgtggaacccatggttct |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26991604 |
agtaggtgtggaacccatggttct |
26991627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 27002369 - 27002597
Alignment:
| Q |
8 |
cgaagaatattatcaactcactaacaacaagaaatcagttaacctagctctctcactaggtactcaaattttggacgagaattactctttaggaaaatct |
107 |
Q |
| |
|
|||| ||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||| |||||||||||| |
|
|
| T |
27002369 |
cgaaaaatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggttctcaaattctcaatgagaattactcattaggaaaatct |
27002468 |
T |
|
| Q |
108 |
ctcacaactaaccaaattcttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggttttt |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27002469 |
ctcacaactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagccgctgatgtgttagttgacggttttt |
27002568 |
T |
|
| Q |
208 |
gttcaagtaggtgtggaacccatggttct |
236 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
27002569 |
gttcaagtaggtgtggaacacatggttct |
27002597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 33821285 - 33821366
Alignment:
| Q |
155 |
aaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttcaagtaggtgtggaacccatggttct |
236 |
Q |
| |
|
|||||||||||||||||| || || | ||||| ||| ||||||| || |||||||| ||||| ||||| || ||||||||| |
|
|
| T |
33821285 |
aaacgccatcaacgttgttctcacttcggctgacgtggtagttgatgggttttgttccagtagatgtgggacacatggttct |
33821366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University