View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_high_44 (Length: 249)
Name: NF14969_high_44
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_high_44 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 30240237 - 30240000
Alignment:
| Q |
12 |
attcttttttgcatgaagtggcttattttatcatatagtgttggacttgtttctttttagcattagtactgcgaacaaacgcgtactgaatctctatacc |
111 |
Q |
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| T |
30240237 |
attcttttttgcatgaagtggcttatttcatcatatagtgttggacttgtttctttttagcattagtactgcgaacagacgcgtactgaagctctatacc |
30240138 |
T |
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| Q |
112 |
ccatacgtaccgaattcttcacatatgtgactatggtctcaacatttgcaaatggatcaccaattgggacacctttatttgtgttacaaacattaacagt |
211 |
Q |
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| T |
30240137 |
ccatacgtaccgaattcttcacatatgtgactatggtctcaacatttgcaaatggatcaccaattgggacaccttcatttgtgttacaaacattaacagt |
30240038 |
T |
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| Q |
212 |
tgcattagtgctatttgtgctatcaattatgacatgaa |
249 |
Q |
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| T |
30240037 |
tgcattagtgttatttgtgctatcaattatgacatgaa |
30240000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 135
Target Start/End: Original strand, 45982969 - 45982998
Alignment:
| Q |
106 |
tataccccatacgtaccgaattcttcacat |
135 |
Q |
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| T |
45982969 |
tataccccatacgtaccgaattcttcacat |
45982998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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