View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_high_46 (Length: 236)
Name: NF14969_high_46
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 1551201 - 1551000
Alignment:
| Q |
21 |
caattttttctcctatatttatggcttaagataggagaattagttgtttatctgtagagggatgctatatatcgcgagaggtatttgatgagaacctcat |
120 |
Q |
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| T |
1551201 |
caattttttctcctatatttatggcttaagataggagaattagttgtttatctgtagagggatgctatatatcgcgagaggtatttgacgagaacctcat |
1551102 |
T |
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| Q |
121 |
caaccctttatatttcttatacctcttaagcatgccactttttctttttcgaaatgcagatgtcaatatataatttagccacacttcattcaacacatgt |
220 |
Q |
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| T |
1551101 |
caaccctttatatttcttatacctcttaagcatgccactttttctttttctaaatgcagatgtcaatatataatttagccacacttcattcaacacatgt |
1551002 |
T |
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| Q |
221 |
at |
222 |
Q |
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|| |
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| T |
1551001 |
at |
1551000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 2537708 - 2537604
Alignment:
| Q |
76 |
agagggatgctatatatcgcgagaggtatttgatgagaacctcatcaaccctttatatttcttatacctcttaagcatgccactttttctttttcgaaat |
175 |
Q |
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| T |
2537708 |
agagggatgctatatatcgcaagaagtatttcccgaaaacctcacaaactctttatatttttcataacgtttaagcatgcaactttttctttttctaatt |
2537609 |
T |
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| Q |
176 |
gcaga |
180 |
Q |
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||||| |
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| T |
2537608 |
gcaga |
2537604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 34299826 - 34299760
Alignment:
| Q |
157 |
actttttctttttcgaaatgcagatgtcaatatataatttagccacacttcattcaacacatgtatg |
223 |
Q |
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| T |
34299826 |
actttttcattttctaactgcagatgttaatatctaatttgtccacacatcattcaacacatgtatg |
34299760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 3756746 - 3756885
Alignment:
| Q |
77 |
gagggatgctatatatcgcgagaggtatttgatgagaacctcatcaaccctttatatttcttatacctcttaagcatgccactttttctttttcgaaatg |
176 |
Q |
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| T |
3756746 |
gagggatgctaaatatcgcgagagatatttcccaaaaacctcgcgaacgctttatatttcttataccgcttca-------actttttcattttctaactg |
3756838 |
T |
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| Q |
177 |
cagatgtcaatatataatttagccacacttcattcaacacatgtatg |
223 |
Q |
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| T |
3756839 |
cagatgttaatatctaatttgtccacacatcattcaacacatgtatg |
3756885 |
T |
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