View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_high_5 (Length: 533)
Name: NF14969_high_5
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_high_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 40785374 - 40784859
Alignment:
| Q |
19 |
agttagagagacatatagtggaaattgttggttacatcattgttgtttgagaataagagttgttttacttattggg--agtgttagtataattatggttg |
116 |
Q |
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| T |
40785374 |
agttagagagacagatagtggaaattgttggttacatcattgttgtttgagaataagagttgttttacttattttgctagtgttagtataattatggttg |
40785275 |
T |
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| Q |
117 |
aatcaattgaactaattatatcatgatcaaagcttatatatccagtataaaggtaagtggcaatcaacaaacaaatcattgttaaaagagattgtattca |
216 |
Q |
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| T |
40785274 |
aatcaattgaattaattatatcatgatcaaagcttatatatccagtataaaggtaagtggcaatcaacaaacaaatcattgttaaaagagattgtattca |
40785175 |
T |
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| Q |
217 |
ggtggaattatggattgtagaaggaaacaagctaatacttgaggtcaattatttgtgagtgcctacctgatatgatacgagcaggtggatagctaggctg |
316 |
Q |
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| T |
40785174 |
ggtggaattatggattgtagaaggaaacaagcta-tacttgaggtcaattatttgtgagtgcctacctgatatgatatgagcaggtggatagctaggctg |
40785076 |
T |
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| Q |
317 |
ttgattgataaaaatagttctccatatatattttatttaccaaattgatcataataatatcacaaaatttaacccaatttggataagagatgctacttgc |
416 |
Q |
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| T |
40785075 |
ttgattcataaaaatagttctccatatatattttatttaccaaattgatcataataatatcacaaaatttaacccaatttggataagagatgctacttgc |
40784976 |
T |
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| Q |
417 |
aaaccaacttgttaatttattttatgaaaaatatatcaaaaacgttatcaatattgtcagcaaaatcagtaacattatagatacttatttaaacaaatga |
516 |
Q |
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| T |
40784975 |
aaaccaacttgttaacttattttatgaaaaatatatcaaaaacgttatcaatattgtcagcaaaatcaataacattatagatacttatttaaacaaatga |
40784876 |
T |
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| Q |
517 |
agtacccattttcttct |
533 |
Q |
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| T |
40784875 |
attaaccattttcttct |
40784859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 308 - 443
Target Start/End: Complemental strand, 40792432 - 40792294
Alignment:
| Q |
308 |
gctaggctgttgattgataaaaatagttctccatatatattttatttaccaaattgatcata--ataatatcacaaaatttaacccaatttggataagag |
405 |
Q |
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| T |
40792432 |
gctaggctgttgattggtagaaatagttctacatatatatactatt-accaaattgatgatataatgatatcacaaaatttaactaaatttggatataag |
40792334 |
T |
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| Q |
406 |
a--tgctacttgcaaaccaacttgttaatttattttatga |
443 |
Q |
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| T |
40792333 |
aattgctacttgcaaaccaacttgttaatttattttatga |
40792294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 40793090 - 40793026
Alignment:
| Q |
22 |
tagagagacatatagtggaaattgttggttacatcattgttgtttgagaataagagttgttttact |
87 |
Q |
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| T |
40793090 |
tagagagacaaatagtggaatttgttggttacatcattgtt-tttgagaataatagatattttact |
40793026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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