View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_high_52 (Length: 212)
Name: NF14969_high_52
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 43560122 - 43559941
Alignment:
| Q |
16 |
cacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggctta |
115 |
Q |
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| T |
43560122 |
cacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataactgattcgagttactatgatgataatggctta |
43560023 |
T |
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| Q |
116 |
acagaagcttcaagagaaattttcaccagcaagcaagcattggaccctttgttctgctatgatttccaatctggttataact |
197 |
Q |
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| T |
43560022 |
acagaagcttcaagagaaattttcaccagcaagcaagcattggaccctttgttctgctatgatttccaatctggttataact |
43559941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 1992703 - 1992527
Alignment:
| Q |
14 |
agcacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggct |
113 |
Q |
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||||| |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1992703 |
agcactgaaacaacagcaccacctatgcaaataccatcagttacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggtt |
1992604 |
T |
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| Q |
114 |
taacagaagcttcaagagaaattttcaccagca---agcaagcattggaccctttgttctgctatgatttccaatct |
187 |
Q |
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| T |
1992603 |
taacagaagcttcaagagaaattttcaccaataaacaacaagcattagaccctttgttctgctatgatttccaatct |
1992527 |
T |
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