View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_high_7 (Length: 462)
Name: NF14969_high_7
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 5231492 - 5231062
Alignment:
| Q |
11 |
gcagcacagacactggtatttacgtagtacacatgcgcctaagattacattaacnnnnnnnnnttaaactaagcttcaataaagtaacaattttggacca |
110 |
Q |
| |
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|||||||| | |||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
5231492 |
gcagcacaaatactggtatttacgtagtacacatgtgcctaagattacattaacaaaaaaaaatcaaactaagcttcaataaagtaacaattttggacca |
5231393 |
T |
|
| Q |
111 |
taatcttatcatgaactaagtcatagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231392 |
taatcttatcatgaactaagtcatagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgt |
5231293 |
T |
|
| Q |
211 |
tttattgctttatgtaaatttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaaattttctaattgttaggttgt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
5231292 |
tttattgctttatgtaaatttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaatttttctaattgttaggttat |
5231193 |
T |
|
| Q |
311 |
aactcaaaccatgaaacaatttaaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgtt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231192 |
aactcaaaccatgaaacaatttaaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgtt |
5231093 |
T |
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| Q |
411 |
cgaccaaaattagttcctccatggtactaca |
441 |
Q |
| |
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| T |
5231092 |
ctaccaaaattagttcctccatggtactaca |
5231062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 7346105 - 7346067
Alignment:
| Q |
347 |
accatattcatcaataggagcatcataatcatagcttgt |
385 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||||||| |
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| T |
7346105 |
accatattcatcaattggagcatcatagtcatagcttgt |
7346067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 17126716 - 17126621
Alignment:
| Q |
343 |
gcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
438 |
Q |
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|||||||||||||||| ||||||||||||||||| || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||||||| |
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| T |
17126716 |
gcataccatattcatcgataggagcatcataatcgtaactcgtggcaatgaaaaggccagaagatgttcttccaaaattagttcctccatggtact |
17126621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 346 - 438
Target Start/End: Original strand, 42988695 - 42988787
Alignment:
| Q |
346 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
438 |
Q |
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||||||||||||||| ||| |||||||| ||||||||||| ||||| ||| |||||| || ||||| ||||||||| ||||||||||| |||| |
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| T |
42988695 |
taccatattcatcaagaggtgcatcatagtcatagcttgtagcaatgaaaggaccaccagctgttctaccaaaatttgttcctccatgatact |
42988787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 272
Target Start/End: Complemental strand, 17126925 - 17126793
Alignment:
| Q |
137 |
actttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttttcaa |
236 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||||| ||||| ||||| | ||||||| ||| ||||| ||||||||||||||||||| | | | |
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| T |
17126925 |
actttacctcaaggttttt---tccaggccatgacactgtcggatcaacagacactaaagctgactcgcattgctttattgctttatgtaaatctcttag |
17126829 |
T |
|
| Q |
237 |
atggctccattttggttcatttggaagtcctaatat |
272 |
Q |
| |
|
||| | ||||||||||||| || ||||||| |||| |
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| T |
17126828 |
atgcccccattttggttcacttataagtcctgatat |
17126793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 438
Target Start/End: Complemental strand, 5452968 - 5452874
Alignment:
| Q |
344 |
cataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
438 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||| || |||| |||||||| ||||| ||||| |||| |
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| T |
5452968 |
cataccgtattcatcaagaggtgcatcataatcatagcttgtggcaataaaaggaccaccagcggttcttccaaaatttgttccaccatgatact |
5452874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 439
Target Start/End: Complemental strand, 52647440 - 52647347
Alignment:
| Q |
346 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
439 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| | ||| || |||| | || || ||| |||||||| ||||||||||||||||| |
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| T |
52647440 |
taccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtacta |
52647347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 439
Target Start/End: Original strand, 22014418 - 22014515
Alignment:
| Q |
342 |
tgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
439 |
Q |
| |
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||||||||||| |||||||| || |||||||||||||| || || | ||| ||| | |||| | |||||||||||| ||||| |||||||||||||| |
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| T |
22014418 |
tgcataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtacta |
22014515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 444
Target Start/End: Original strand, 8140691 - 8140788
Alignment:
| Q |
347 |
accatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtactacatga |
444 |
Q |
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|||||||||||| | ||||||||||| |||||||| || | |||||| |||| | || ||| || |||||||| ||||||||||| |||| ||||| |
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| T |
8140691 |
accatattcatctagtggagcatcatagtcatagctggtagtgataaaaggacctccagctgtgcggccaaaatttgttcctccatgatactgcatga |
8140788 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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