View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14969_low_1 (Length: 911)
Name: NF14969_low_1
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 380 - 867
Target Start/End: Complemental strand, 10811915 - 10811427
Alignment:
| Q |
380 |
tagtatcaaatttgaggtgaacttttgtagtaattaattagcacagatttgcttaaatgttccctacttttgtagtaaaattacatatttatgtaatgaa |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10811915 |
tagtatcaaatttgaggtgaacttttgtagtaattaattagcacagatttgcttaaatgttccctacttttgaagtaaaattacatatttatgtaatgaa |
10811816 |
T |
|
| Q |
480 |
gtattgaatgtaatatttaaccaaaatatatattagtgttattttggtgcta-------tacattggtaacnnnnnnnnnnnnnnnnngccaaaagctgg |
572 |
Q |
| |
|
||| |||||||||||||||| |||||| |||||| ||||||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
10811815 |
gtaatgaatgtaatatttaaacaaaat----attagtaatattttggtgctatattatatacattgataacttttttattttgtt---gccaaaagctgg |
10811723 |
T |
|
| Q |
573 |
ttaacctcaatattgtggctgtttgtgtttagcaaattgcacaactcaaataaattgaggtgttcaacattgtgtacaaagg-aacttttcattttataa |
671 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || ||| ||||||||| |
|
|
| T |
10811722 |
ttcacctcaatattgtggctgtttgtgtttagcaaattgcacaactcaa-taaattgaggtgttcaacaatgtgtacaaagggaaatttccattttatat |
10811624 |
T |
|
| Q |
672 |
gttctaccactatgaaaacttggacatctaaactggtatattttcataaattccataactaaagcttttctttttgatgctcaaagacaatctattctga |
771 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||||||| ||| |
|
|
| T |
10811623 |
gttctaccactatgaaaacttggacatctaaattggtatattttcataaatcccattactaaagcttctctttctgatgctcaaagacaatctattatga |
10811524 |
T |
|
| Q |
772 |
ttgggaaatgtgttccagaacatgcataaacgcattcacatattctcagagtcaaaataaaataatagatcgttcaaaccaatg-tttaagaacgta |
867 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |||| |||||||||||| |
|
|
| T |
10811523 |
ttgagaaatgtgttccagaacatgcataaacgcattcacatattctcagagtcaaaataaaatattagctcattcaaactaatgttttaagaacgta |
10811427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 10812280 - 10811970
Alignment:
| Q |
1 |
atctaccctgaagaaagcaacttcaaagaacacaaaaacaagggatcatcgcttgaaaagggtacaaaacatagcacaaatctagctcaagcacaaaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10812280 |
atctaccctgaagaaagcaacttcaaagaacacaaaaataagggatcatcgcttgaaaagggtacaaaacgtagcacaaatctagctcaagcacaaaagc |
10812181 |
T |
|
| Q |
101 |
ttcacaggttgggattctcttacattgcaacatcttttctttacatagtaattaaggttaaagcattttacaatggtttccttggagatgttgctagtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10812180 |
ttcacaggttgggattctcttacattgcaacatcttttctttacatagtaattaaggttaaagaattttacaatggtttccttggagatgttgctagtga |
10812081 |
T |
|
| Q |
201 |
atcaaggatgatgggaattgatgcaccaatggcagaaccatatttctctgttccagttattccaaattaaccaagtacaaatattagaagcaatatcatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
10812080 |
atcaaggatgatgggaattgatgcaccaatggcagaaccatatttctctgttccagttattccaaatt----------aaataataggagcaatatcatg |
10811991 |
T |
|
| Q |
301 |
catgattgtaatgtctagtat |
321 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
10811990 |
catgattataatgtctagtat |
10811970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University