View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14969_low_10 (Length: 442)

Name: NF14969_low_10
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14969_low_10
NF14969_low_10
[»] chr5 (23 HSPs)
chr5 (235-439)||(20733654-20733854)
chr5 (93-231)||(25897987-25898125)
chr5 (93-231)||(22213269-22213407)
chr5 (93-231)||(36275538-36275676)
chr5 (93-230)||(30493947-30494084)
chr5 (93-230)||(30534290-30534427)
chr5 (93-231)||(26674060-26674198)
chr5 (93-231)||(26945665-26945803)
chr5 (105-231)||(42394105-42394239)
chr5 (110-231)||(11740537-11740658)
chr5 (18-106)||(30493790-30493880)
chr5 (18-106)||(30534133-30534223)
chr5 (18-106)||(25897816-25897906)
chr5 (18-106)||(26674262-26674352)
chr5 (18-106)||(26945868-26945958)
chr5 (24-110)||(13946279-13946367)
chr5 (18-106)||(11742029-11742118)
chr5 (18-95)||(36275733-36275811)
chr5 (93-231)||(13946448-13946576)
chr5 (18-106)||(22213487-22213578)
chr5 (18-106)||(42393925-42394015)
chr5 (92-186)||(28611667-28611762)
chr5 (18-50)||(42644900-42644932)
[»] chr3 (36 HSPs)
chr3 (93-231)||(8082411-8082549)
chr3 (93-231)||(30801072-30801210)
chr3 (93-231)||(37609163-37609301)
chr3 (93-231)||(18996576-18996714)
chr3 (93-231)||(18999115-18999253)
chr3 (93-231)||(24373072-24373209)
chr3 (93-231)||(28246933-28247071)
chr3 (93-231)||(41957979-41958117)
chr3 (93-231)||(45572660-45572798)
chr3 (93-231)||(13696734-13696872)
chr3 (93-230)||(11685811-11685948)
chr3 (93-228)||(53151606-53151739)
chr3 (93-231)||(30260656-30260794)
chr3 (18-106)||(30260896-30260986)
chr3 (18-106)||(11685641-11685731)
chr3 (93-232)||(20307321-20307460)
chr3 (18-106)||(41958198-41958288)
chr3 (24-106)||(13696562-13696646)
chr3 (18-106)||(3777478-3777568)
chr3 (18-106)||(8082241-8082331)
chr3 (18-106)||(24373275-24373365)
chr3 (93-195)||(3777296-3777398)
chr3 (18-106)||(18996793-18996883)
chr3 (18-106)||(18999332-18999422)
chr3 (18-106)||(53151432-53151522)
chr3 (18-105)||(28246764-28246853)
chr3 (18-110)||(30800915-30801010)
chr3 (21-106)||(37608996-37609082)
chr3 (18-71)||(20307560-20307613)
chr3 (108-213)||(54162925-54163030)
chr3 (18-60)||(45572909-45572952)
chr3 (18-70)||(20329538-20329590)
chr3 (147-199)||(48332116-48332168)
chr3 (18-88)||(54162757-54162829)
chr3 (93-136)||(30260816-30260859)
chr3 (72-106)||(45572878-45572912)
[»] chr8 (24 HSPs)
chr8 (93-231)||(2734852-2734990)
chr8 (93-231)||(9686368-9686506)
chr8 (93-231)||(38567583-38567721)
chr8 (93-231)||(18916213-18916351)
chr8 (93-231)||(35563798-35563936)
chr8 (93-231)||(38526487-38526625)
chr8 (93-231)||(41486472-41486610)
chr8 (93-231)||(1197620-1197758)
chr8 (93-231)||(11661335-11661473)
chr8 (151-231)||(1996320-1996400)
chr8 (18-106)||(11661199-11661289)
chr8 (144-231)||(24697549-24697636)
chr8 (18-106)||(2735057-2735147)
chr8 (18-106)||(18916040-18916130)
chr8 (18-106)||(41486690-41486780)
chr8 (18-99)||(1197448-1197531)
chr8 (18-106)||(9686550-9686640)
chr8 (18-106)||(38526703-38526793)
chr8 (18-106)||(35563643-35563733)
chr8 (18-106)||(2001528-2001618)
chr8 (18-86)||(38567056-38567126)
chr8 (18-106)||(24697752-24697841)
chr8 (158-228)||(43596095-43596165)
chr8 (18-95)||(43595907-43595987)
[»] chr2 (12 HSPs)
chr2 (93-231)||(30518452-30518590)
chr2 (93-231)||(15805820-15805958)
chr2 (105-231)||(27641025-27641151)
chr2 (93-231)||(32597356-32597494)
chr2 (105-231)||(5614616-5614742)
chr2 (18-106)||(30518672-30518761)
chr2 (18-106)||(15805651-15805741)
chr2 (18-106)||(5614434-5614524)
chr2 (18-110)||(27641242-27641336)
chr2 (18-106)||(32597576-32597666)
chr2 (18-106)||(36871213-36871303)
chr2 (18-50)||(34580242-34580274)
[»] chr4 (29 HSPs)
chr4 (93-229)||(26695830-26695966)
chr4 (93-231)||(2623312-2623450)
chr4 (93-231)||(24072392-24072530)
chr4 (93-231)||(29052027-29052165)
chr4 (93-231)||(40591126-40591264)
chr4 (93-231)||(56080602-56080740)
chr4 (93-231)||(9034026-9034165)
chr4 (93-228)||(39499257-39499392)
chr4 (93-228)||(39502596-39502731)
chr4 (109-231)||(44506120-44506242)
chr4 (105-229)||(128018-128142)
chr4 (117-229)||(37995456-37995568)
chr4 (18-106)||(9033856-9033946)
chr4 (18-106)||(24072597-24072687)
chr4 (18-106)||(44506337-44506427)
chr4 (18-106)||(56080819-56080909)
chr4 (18-106)||(37995671-37995760)
chr4 (18-106)||(39502812-39502901)
chr4 (93-231)||(45620395-45620532)
chr4 (147-232)||(51790234-51790319)
chr4 (18-106)||(2623184-2623274)
chr4 (18-106)||(40590957-40591047)
chr4 (18-106)||(29051853-29051943)
chr4 (18-106)||(26696047-26696138)
chr4 (18-106)||(127852-127942)
chr4 (18-106)||(51790008-51790098)
chr4 (18-106)||(31334950-31335040)
chr4 (18-106)||(45620223-45620313)
chr4 (163-211)||(54230752-54230800)
[»] scaffold0051 (2 HSPs)
scaffold0051 (93-231)||(59019-59157)
scaffold0051 (18-106)||(59225-59315)
[»] chr7 (24 HSPs)
chr7 (93-231)||(20372509-20372647)
chr7 (93-231)||(31293026-31293164)
chr7 (93-231)||(49142013-49142151)
chr7 (93-231)||(30586064-30586202)
chr7 (93-230)||(41743126-41743263)
chr7 (105-228)||(47266253-47266376)
chr7 (93-222)||(31577403-31577531)
chr7 (144-231)||(32031364-32031451)
chr7 (18-106)||(49141855-49141945)
chr7 (18-106)||(20372336-20372426)
chr7 (18-106)||(30586267-30586357)
chr7 (18-106)||(47266470-47266560)
chr7 (93-204)||(44079868-44079979)
chr7 (18-106)||(44080058-44080148)
chr7 (157-231)||(27620193-27620267)
chr7 (17-106)||(31293230-31293321)
chr7 (24-95)||(31577616-31577688)
chr7 (18-106)||(22916575-22916665)
chr7 (23-70)||(27619993-27620040)
chr7 (18-60)||(41743375-41743417)
chr7 (18-98)||(43175052-43175134)
chr7 (105-231)||(22916757-22916883)
chr7 (24-106)||(8047755-8047839)
chr7 (168-231)||(8048301-8048364)
[»] chr6 (6 HSPs)
chr6 (93-231)||(4653578-4653716)
chr6 (93-230)||(33756400-33756537)
chr6 (144-231)||(24765199-24765286)
chr6 (18-106)||(33756599-33756690)
chr6 (20-106)||(24765423-24765511)
chr6 (72-106)||(4653795-4653829)
[»] chr1 (28 HSPs)
chr1 (93-231)||(32550411-32550549)
chr1 (93-231)||(45360175-45360313)
chr1 (93-231)||(5555198-5555336)
chr1 (93-231)||(14236401-14236531)
chr1 (93-230)||(43069078-43069215)
chr1 (93-231)||(19565168-19565307)
chr1 (93-215)||(40125432-40125554)
chr1 (93-214)||(21620060-21620182)
chr1 (18-106)||(25473723-25473813)
chr1 (18-106)||(19565387-19565476)
chr1 (18-110)||(45360389-45360483)
chr1 (110-228)||(4643592-4643710)
chr1 (18-106)||(3656723-3656813)
chr1 (18-106)||(14236599-14236689)
chr1 (105-231)||(3656526-3656644)
chr1 (145-228)||(3027730-3027813)
chr1 (18-106)||(21620262-21620352)
chr1 (18-106)||(40125634-40125724)
chr1 (18-102)||(43068924-43069009)
chr1 (18-95)||(32550278-32550357)
chr1 (93-231)||(6694058-6694199)
chr1 (18-106)||(5555415-5555505)
chr1 (144-216)||(25304381-25304453)
chr1 (18-106)||(4643793-4643882)
chr1 (18-110)||(6693931-6694025)
chr1 (23-99)||(25304206-25304284)
chr1 (163-213)||(35371964-35372014)
chr1 (168-229)||(16296884-16296945)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 235 - 439
Target Start/End: Original strand, 20733654 - 20733854
Alignment:
Q  235 gtaccatgcaattcgggttagttatggaatggcgagcatgcatgctacagttcaatttttgtactgactagtaaaatttatttttatattattgtaccat 334  Q
    |||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  20733654 gtaccatgcagttcgggtaagttatgggatggtgagcatgcatgctacagttcaatttttgtactgacta---aaatttatttttatattattgtaccat 20733750  T
Q  335 acaattttcatcaatcttttgtcatcggtacagatttaagttaataaatactatggttgttcattcattatagtcctcaacctgatgcatgaaagtcatt 434  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  20733751 acaattttcatcaatcttttgccatcagtacagatttaagttaataaatactatggttgttcattcattataatcctcaacc-gatgcatgaaagtcatt 20733849  T
Q  435 aagtt 439  Q
    |||||    
T  20733850 aagtt 20733854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 25897987 - 25898125
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25897987 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 25898086  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25898087 attcctgggaataatttgtgtttcccaaaaacaaacgcc 25898125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 22213407 - 22213269
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| || ||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22213407 taacttccaattttttcaagaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 22213308  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22213307 attcctgggaataatttgtgtttcccaaaaacaaacgcc 22213269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 36275676 - 36275538
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36275676 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgtt 36275577  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  36275576 attcctggaaataatttgtgtttcccaaaaacaaacgcc 36275538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 30493947 - 30494084
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  30493947 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaataatcaaattttcatattttcattcccgggtatatt 30494046  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgc 230  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30494047 attcctgggaataatttgtgttttccaaaaacaaacgc 30494084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 30534290 - 30534427
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  30534290 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaataatcaaattttcatattttcattcccgggtatatt 30534389  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgc 230  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30534390 attcctgggaataatttgtgttttccaaaaacaaacgc 30534427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 26674198 - 26674060
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||   ||||||    
T  26674198 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattcccatatatgtt 26674099  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||| |||| ||||||||||||||||| ||||||||||||    
T  26674098 atttctggaaataatttgtgtttccccaaaacaaacgcc 26674060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 26945803 - 26945665
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||   ||||||    
T  26945803 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattcccatatatgtt 26945704  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||| |||| ||||||||||||||||| ||||||||||||    
T  26945703 atttctggaaataatttgtgtttccccaaaacaaacgcc 26945665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 42394105 - 42394239
Alignment:
Q  105 tttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattt--------tcatattttcattcccgggtatgttattc 196  Q
    |||||| ||| |||||||||||||||||||||       ||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  42394105 tttccatgaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcatattttcattcccgggtatgttattc 42394204  T
Q  197 ctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||| ||||||||||||||||||||||||||||||    
T  42394205 ctggaaataatttgtgtttcccaaaaacaaacgcc 42394239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 11740658 - 11740537
Alignment:
Q  110 aggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataattt 209  Q
    ||||| |||||||||||||||||||||       ||||||||| || |||||||||||||||||||||||||||| |||||||||| ||| || ||||||    
T  11740658 aggaatgtcaagttatttgccaaacactttttttaacaaatacacaggaatcaaattttcatattttcattcccgagtatgttatttctgagagtaattt 11740559  T
Q  210 gtgtttcccaaaaacaaacgcc 231  Q
    ||||||||| ||||||||||||    
T  11740558 gtgtttccccaaaacaaacgcc 11740537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 30493790 - 30493880
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||| |||||||||||||||||    
T  30493790 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaagattcctgggaatggagtaacttcccataacttccattatt 30493880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 30534133 - 30534223
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||| |||||||||||||||||    
T  30534133 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaagattcctgggaatggagtaacttcccataacttccattatt 30534223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 25897816 - 25897906
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||||| | |||||||||||||||    
T  25897816 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctaggaatggagtaacttcctataacttccattatt 25897906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 26674352 - 26674262
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  | ||||||||||||||| |||||||||||||||||    
T  26674352 tatacccatgtttgttatgagattgagaaaaaaatattcctgggtataaaggttcctaggaatggagtaacttcccataacttccattatt 26674262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 26945958 - 26945868
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  | ||||||||||||||| |||||||||||||||||    
T  26945958 tatacccatgtttgttatgagattgagaaaaaaatattcctgggtataaaggttcctaggaatggagtaacttcccataacttccattatt 26945868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 13946279 - 13946367
Alignment:
Q  24 catgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatttcca 110  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||  || |||||||||||||| |||||||||||||||||||||    
T  13946279 catgtttgttatgaggttgagaaaaaaatattcctaggtataaaggttcctgagaatggagtaacttcccataacttccattatttcca 13946367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 11742118 - 11742029
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggttt--tgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||||||| ||||||||| |||||||||| |||||    
T  11742118 tatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaagattcatgggaatgaagtaacttt-cataacttcccttatt 11742029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 36275811 - 36275733
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataa 95  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||    
T  36275811 tatacacatgtttgttatgaggttgagaaaaaatattcctgggtataaaggttcctcggaatggagtaacttcccataa 36275733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 13946448 - 13946576
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||||||| || ||||||||||||||||||||        ||||||||||||||||||||||||||||        || ||||||||||    
T  13946448 taacttccaatttttccagaaatgtcaagttatttgccaaacattttttttaacaaatacccaagaatcaaattttcat--------tctcgggtatgtt 13946539  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||||||||||  | |||||||||||||||||||||    
T  13946540 attcctgggaataa--tatgtttcccaaaaacaaacgcc 13946576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 22213578 - 22213487
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaata-ttcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    |||| |||||||||||||||||||||||| |||||| ||||||||||||||||||  ||||||||||||||||| | |||| ||||||||||    
T  22213578 tatatccatgtttgttatgaggttgagaaaaaaatatttcctgggtataaaggttcctgggaatggagtaacttcctataatttccattatt 22213487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 42393925 - 42394015
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||| ||||||||||||| |||||||||||||| |||||||||||  |||||||  |||||||| |||||||||| ||||||    
T  42393925 tatacccatgtttattatgaggttgagaaaaaaatattcctgagtataaaggttcctgggaattaagtaacttcccataacttcaattatt 42394015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 28611762 - 28611667
Alignment:
Q  92 ataacttccattatttccaggaaagtcaagttatttgccaaacac-nnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccggg 186  Q
    |||||||||| | |||||| ||| |||||||||||||||||||||        |||||||||| | |||||||||||| || |||||||| |||||    
T  28611762 ataacttccaatttttccatgaatgtcaagttatttgccaaacacttttttttaacaaatacctaggaatcaaatttttattttttcatttccggg 28611667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 42644900 - 42644932
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa 50  Q
    ||||||||||||| |||||||||||||||||||    
T  42644900 tatacccatgtttattatgaggttgagaaaaaa 42644932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 8082411 - 8082549
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8082411 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 8082510  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8082511 attcctgggaataatttgtgtttcccaaaaacaaacgcc 8082549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 30801072 - 30801210
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30801072 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 30801171  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  30801172 attcctgagaataatttgtgtttcccaaaaacaaacgcc 30801210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 37609163 - 37609301
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||| ||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37609163 taacttccaatttttctaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcactcccgggtatgtt 37609262  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37609263 attcctgggaataatttgtgtttcccaaaaacaaacgcc 37609301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 18996714 - 18996576
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||| ||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18996714 taacttccaatttttccaggaatgtcaagttatttaccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgtt 18996615  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  18996614 attcctaggaataatttgtgtttcccaaaaacaaacgcc 18996576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 18999253 - 18999115
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||| ||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18999253 taacttccaatttttccaggaatgtcaagttatttaccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgtt 18999154  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  18999153 attcctaggaataatttgtgtttcccaaaaacaaacgcc 18999115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 24373209 - 24373072
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||  ||||||    
T  24373209 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccga-tatgtt 24373111  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24373110 attcctgggaataatttgtgtttcccaaaaacaaacgcc 24373072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 28246933 - 28247071
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||| ||| ||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28246933 taacttccaatttttccacgaatgtcaagttatttgacaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 28247032  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  28247033 attcctgggaataatttgtatttcccaaaaacaaacgcc 28247071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 41958117 - 41957979
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41958117 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 41958018  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  41958017 attcctgaaaataatttgtgtttcccaaaaacaaacgcc 41957979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 45572798 - 45572660
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45572798 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 45572699  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||| | ||||||||| |||||||||||||||||||||    
T  45572698 attcccgagaataatttatgtttcccaaaaacaaacgcc 45572660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 13696734 - 13696872
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       ||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  13696734 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatactcaataatcaaattttcatattttcattctcgggtatgtt 13696833  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13696834 attcctgggaataatttgtgtttcccaaaaacaaacgcc 13696872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 11685811 - 11685948
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11685811 taacttccaatttttacaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgtt 11685910  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgc 230  Q
    ||||||  ||||||||||||||||||||||||||||||    
T  11685911 attcctatgaataatttgtgtttcccaaaaacaaacgc 11685948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 53151606 - 53151739
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53151606 taacttccaatttttccaggaatgtcaagttatttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 53151705  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaac 228  Q
    ||||||||||||||  ||||||||||||||||||||    
T  53151706 attcctgggaataa--tgtgtttcccaaaaacaaac 53151739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 30260794 - 30260656
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||  |||||    
T  30260794 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggaaatgtt 30260695  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||| |  ||||||||||||||||||||||||||||||    
T  30260694 attccagaaaataatttgtgtttcccaaaaacaaacgcc 30260656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 30260986 - 30260896
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  30260986 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 30260896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 11685641 - 11685731
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||  ||||||||||||||||    
T  11685641 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttctcataacttccattatt 11685731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 232
Target Start/End: Complemental strand, 20307460 - 20307321
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||| ||| || ||||||||||||||||||       ||||||||||||| ||||||||||| ||| |||||||| ||| ||||||    
T  20307460 taacttccagtttttccaagaatgttaagttatttgccaaacacttattttaacaaatacccaataatcaaatttttataatttcattctcggatatgtt 20307361  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcct 232  Q
    |||||||  ||||||||||||||| | |||||||||||||    
T  20307360 attcctgaaaataatttgtgtttctccaaaacaaacgcct 20307321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 41958288 - 41958198
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  41958288 tatatccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 41958198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 13696562 - 13696646
Alignment:
Q  24 catgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  13696562 catgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 13696646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 3777568 - 3777478
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||| | |||||||||||||||||    
T  3777568 tatacccatgtttgttatgaggttgagaaaaaaatattcctaggtataaaggttcttgagaatggagtaacctcccataacttccattatt 3777478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 8082241 - 8082331
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    |||| |||| ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  8082241 tatatccatttttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 8082331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 24373365 - 24373275
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| | ||||||||| |||||||    
T  24373365 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacctcccataactttcattatt 24373275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 3777398 - 3777296
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||| ||||||||||       |||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  3777398 taacttccaatttttccaggaatgtcaagttatctgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcggatatgtt 3777299  T
Q  193 att 195  Q
    |||    
T  3777298 att 3777296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 18996883 - 18996793
Alignment:
Q  18 tatacccatgtttgttatgaggttgag--aaaaaatattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  18996883 tatacccatgtt-gttatgaggttgaggaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 18996793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 18999422 - 18999332
Alignment:
Q  18 tatacccatgtttgttatgaggttgag--aaaaaatattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  18999422 tatacccatgtt-gttatgaggttgaggaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 18999332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 53151432 - 53151522
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||  || |||||||||||||| |||||||||||||||||    
T  53151432 tatacccatgtttgttatcaggttgagaaaaaaatattcctaggtataaaggttcctgagaatggagtaacttcccataacttccattatt 53151522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 28246764 - 28246853
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattat 105  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||  |||||||||||||||||  |||||||||||||||    
T  28246764 tatacccatgtttgttatgaggttgagaaaaaaatattcctagatataaaggttcatgggaatggagtaacttctcataacttccattat 28246853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 30800915 - 30801010
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattc-ctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatttcca 110  Q
    ||||||||||||||||||||||||||| |||||||||||  | ||||||||||||  |||||||||||||||||  ||||||||||||||||||||    
T  30800915 tatacccatgtttgttatgaggttgagaaaaaaatattctttaggtataaaggttactgggaatggagtaacttctcataacttccattatttcca 30801010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 37608996 - 37609082
Alignment:
Q  21 acccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||| |||| ||||||||||||    
T  37608996 acccatgtttgttatgaggttgagaaaaaaatattcct-ggtataaaggtttctgggaatagagtaacttcccatgacttccattatt 37609082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 20307613 - 20307560
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggttt 71  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  20307613 tatactcatgtttgttatgaggttaagaaaaaatattcctgggtataaaagttt 20307560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 54162925 - 54163030
Alignment:
Q  108 ccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataat 207  Q
    ||||||| ||||| ||||| |||||||||       || ||||||| | |||||||||||||||||||| |||||||| || |||||||||||| ||||     
T  54162925 ccaggaatgtcaacttattcgccaaacacttttattaaaaaatacctaggaatcaaattttcatatttttattcccggataagttattcctgggtataac 54163024  T
Q  208 ttgtgt 213  Q
    ||||||    
T  54163025 ttgtgt 54163030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 45572952 - 45572909
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctggg 60  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  45572952 tatacccatgtttgttatgaggttgagaaaaaaatattcctggg 45572909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 20329590 - 20329538
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt 70  Q
    ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  20329590 tatactcatgtttgttatgaggttgagaaaaaaatattcct-ggtataaaggtt 20329538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 48332116 - 48332168
Alignment:
Q  147 aaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctg 199  Q
    ||||| ||||||||||||||||||||||| |||||  ||||| ||||||||||    
T  48332116 aaatatccaagaatcaaattttcatatttacattcttgggtaagttattcctg 48332168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 54162757 - 54162829
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactt 88  Q
    |||||||||||||||||| |||| ||| ||||||||||||| |||| |||||||  |||||||| ||||||||    
T  54162757 tatacccatgtttgttataaggtcgagaaaaaaatattcctaggtacaaaggttcctgggaatgaagtaactt 54162829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 30260859 - 30260816
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacac 136  Q
    ||||||||| | |||||||||| |||||||||||||||||||||    
T  30260859 taacttccaatttttccaggaatgtcaagttatttgccaaacac 30260816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 45572912 - 45572878
Alignment:
Q  72 tgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||| |||||||||||||||||    
T  45572912 tgggaatggagtaacttcccataacttccattatt 45572878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 2734990 - 2734852
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2734990 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 2734891  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  2734890 attcctgggaatagtttgtgtttcccaaaaacaaacgcc 2734852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 9686506 - 9686368
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| ||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9686506 taacttccaatttttccaggaatgtcaagttatttgacaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 9686407  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9686406 attcctgggaataatttgtgtttcccaaaaacaaacgcc 9686368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 38567583 - 38567721
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||| ||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38567583 taacttccaatttttccaagaatgtcaagttatttgccaaacacttttttgaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 38567682  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38567683 attcctgggaataatttgtgtttcccaaaaacaaacgcc 38567721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 18916213 - 18916351
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| ||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18916213 taacttccaatttttccaggaatgtcaaattatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccaggtatgtt 18916312  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  18916313 attcctcggaataatttgtgtttcccaaaaacaaacgcc 18916351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 35563798 - 35563936
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35563798 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatgtt 35563897  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  35563898 attcccggaaataatttgtgtttcccaaaaacaaacgcc 35563936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 38526625 - 38526487
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38526625 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatactcaagaatcaaattttcatattttcattcccgggtatgtt 38526526  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  38526525 attcctgggaataatttatgtttcccaaaaacaaacgcc 38526487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 41486610 - 41486472
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | | |||||||| |||||||||||||||||||||       |||||||| |||||||||||||||||||||||||| |||||| ||||||    
T  41486610 taacttccaatttatccaggaatgtcaagttatttgccaaacactttttttaacaaatatccaagaatcaaattttcatattttcagtcccggatatgtt 41486511  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41486510 attcctgggaataatttgtgtttcccaaaaacaaacgcc 41486472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 1197620 - 1197758
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| | |||| |||||||||||||||||||||       |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  1197620 taacttccaattttttctggaatgtcaagttatttgccaaacactttttttaacaaatacccaggaatcaaattttcatattttcattcccggatatgtt 1197719  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  1197720 attcctgagaataatttgtgtttcccaaaaacacacgcc 1197758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 11661335 - 11661473
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| || ||| |||||||||||||||||||||       |||||||||  |||||||||||||||||||||||||||||| |||| ||    
T  11661335 taacttccaattttttcaagaatgtcaagttatttgccaaacactttttttaacaaatacttaagaatcaaattttcatattttcattcccgagtatctt 11661434  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  11661435 attcttgggaataatttgtgtttcccaaaaacaaacgcc 11661473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 1996400 - 1996320
Alignment:
Q  151 acccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  1996400 acccaagaatcaaattttcatattttcgttcccggatatgttattcctgagaataatttgtgtttcccaaaaacaaacgcc 1996320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 11661199 - 11661289
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  11661199 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 11661289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 24697636 - 24697549
Alignment:
Q  144 aacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||| |||||||||||||||||||||||||||  ||||||||||||| |||||||||| |||||||| ||||||||||||    
T  24697636 aacaaatacccatgaatcaaattttcatattttcattcccatgtatgttattcctaggaataatttatgtttccccaaaacaaacgcc 24697549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 2735147 - 2735057
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||||||||    
T  2735147 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaattgagtaacttcccataacttccattatt 2735057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 18916040 - 18916130
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  18916040 tatacccatgtttgttatgaggttgagaaaaaaatatttctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 18916130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 41486780 - 41486690
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| | |||||||||||||||||    
T  41486780 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacctcccataacttccattatt 41486690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 1197448 - 1197531
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttc 99  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  1197448 tatatccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcttgggaatggagtaacttcccataacttc 1197531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 9686640 - 9686550
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||||||||||  ||||||||||||||||| |||||||||||||||||    
T  9686640 tatacccatgtttgttatgaggttgagaaaaaaatattcttgagtataaaggttcctgggaatggagtaacttcccataacttccattatt 9686550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 38526793 - 38526703
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||||||  |||||||||||||||||  ||||||||||||||||    
T  38526793 tatacccatgtttgttatgaggttgagaaaaaaatatttctaggtataaaggttcctgggaatggagtaacttctcataacttccattatt 38526703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 35563643 - 35563733
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||  |||||||||||||| || |||||||||||||||||    
T  35563643 tatacccatgtttgttatgagcttgagaaaaaaaaattcatgggtataaaggttcctgggaatggagtaatttcccataacttccattatt 35563733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 2001618 - 2001528
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||| ||||||||||| ||||||||||||  ||||||||||  | |||||||||||||||  ||||||||||||||||    
T  2001618 tatacccatgtttgttacgaggttgagaaaaaaatattcctgaatataaaggttcctaggaatggagtaacttctcataacttccattatt 2001528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 38567056 - 38567126
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaac 86  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  38567056 tatatccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaac 38567126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 24697841 - 24697752
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaa-atattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||| |||||||| |||||| | || ||||||||| ||||||||| |||||||| |||||||||| ||||||    
T  24697841 tatacccatgtttgttatgaggtagagaaaaatatattcat-ggcataaaggttcttgggaatgaagtaacttcccataacttcgattatt 24697752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 43596165 - 43596095
Alignment:
Q  158 aatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaac 228  Q
    ||||||| |||||||||||||||  ||| |||||| || ||| |||||||||||||||||| |||||||||    
T  43596165 aatcaaaatttcatattttcattttcggatatgttttttctgagaataatttgtgtttccccaaaacaaac 43596095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 43595907 - 43595987
Alignment:
Q  18 tatacccatgtttgttatgaggttga--gaaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataa 95  Q
    ||||||| ||||||||||||||||||  ||||||| | || ||||||||||||||  |||||||| |||||||||||||||    
T  43595907 tatacccgtgtttgttatgaggttgagggaaaaaaaaatcatgggtataaaggttcatgggaatgaagtaactttccataa 43595987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 30518590 - 30518452
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518590 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 30518491  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  30518490 attcatgggaataatttgtgtttcccaaaaacaaacgcc 30518452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 15805820 - 15805958
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||||||| || ||||||||||||| |||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15805820 taacttccaatttttccagaaatgtcaagttatttgtcaaacactttttttaacaaatacccaagaatcaaattttaatattttcattcccgggtatgtt 15805919  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15805920 attcctgggaataatttgtgtttcccaaaaacaaacgcc 15805958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 27641151 - 27641025
Alignment:
Q  105 tttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaat 204  Q
    |||||||||| | |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27641151 tttccaggaatgccaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctgggaat 27641052  T
Q  205 aatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||| |||||||||||||||||||||    
T  27641051 aatttttgtttcccaaaaacaaacgcc 27641025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 32597494 - 32597356
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||| |||||        |||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  32597494 taacttccaatttttccaggaatgtcaagttatttgctaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatatt 32597395  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||| ||| |||||||||||||||||||||||||||||||    
T  32597394 atttctgagaataatttgtgtttcccaaaaacaaacgcc 32597356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 5614616 - 5614742
Alignment:
Q  105 tttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaat 204  Q
    |||||| ||| |||||||||||||||||||||       |||||||| |||||||||||||||| ||||||||||||||| |||| ||||||||||||||    
T  5614616 tttccaagaatgtcaagttatttgccaaacactttttttaacaaatatccaagaatcaaatttttatattttcattcccgagtatattattcctgggaat 5614715  T
Q  205 aatttgtgtttcccaaaaacaaacgcc 231  Q
    | |||||||||||||||||||||||||    
T  5614716 agtttgtgtttcccaaaaacaaacgcc 5614742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 30518761 - 30518672
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||||||||    
T  30518761 tatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggttcctgggaattgagtaacttcccataacttccattatt 30518672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 15805651 - 15805741
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  15805651 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 15805741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 5614434 - 5614524
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  5614434 tatacccatgtttgttatgaggttgagaaaaaaatattcttgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 5614524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 27641336 - 27641242
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatttcca 110  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||| ||  ||||||||||||||||| |||||||||||||||||||||    
T  27641336 tatacccatgtttgttatgaggttgagaaaaaaatatttctgggtataaagattcctgggaatggagtaacttcccataacttccattatttcca 27641242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 32597666 - 32597576
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || |||||||||||||| |||||||||||||||||    
T  32597666 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgagaatggagtaacttcccataacttccattatt 32597576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 36871303 - 36871213
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaat-attcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||| |||  || |||| ||| ||| |||||||||||| |||||| |||||||| || |||||| |||||||||||| ||||    
T  36871303 tatacccatgttttttacaagattgataaacaattattcctgggtatgaaggttcttgggaatagaataacttcccataacttccaatatt 36871213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 34580274 - 34580242
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa 50  Q
    ||||||||||||||||||||| |||||||||||    
T  34580274 tatacccatgtttgttatgagattgagaaaaaa 34580242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 26695966 - 26695830
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||| ||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26695966 taacttccaatttttctaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 26695867  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacg 229  Q
    |||||||||||||||||||||||||||||||||||||    
T  26695866 attcctgggaataatttgtgtttcccaaaaacaaacg 26695830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 2623312 - 2623450
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2623312 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 2623411  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  2623412 attcctaggaataatttgtgtttcccaaaaacaaacgcc 2623450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 24072530 - 24072392
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24072530 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 24072431  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  24072430 attcctggaaatagtttgtgtttcccaaaaacaaacgcc 24072392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 29052027 - 29052165
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29052027 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggcatgtt 29052126  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  29052127 attcctgagaataatttgtgtttcccaaaaacaaacgcc 29052165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 40591126 - 40591264
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| ||||| |||||||||||||||       || ||||||||||||||||||||||||||||||||||| ||||||||||    
T  40591126 taacttccaatttttccaggaatgtcaaattatttgccaaacactttttttaataaatacccaagaatcaaattttcatattttcattctcgggtatgtt 40591225  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40591226 attcctgggaataatttgtgtttcccaaaaacaaacgcc 40591264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 56080740 - 56080602
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| ||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  56080740 taacttccaatttttccaggaatgtcaagttatttgtcaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgtt 56080641  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  56080640 attcctgggaataatttgtgtttcccaaaaataaacgcc 56080602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 9034026 - 9034165
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccggg-tatgt 191  Q
    ||||||||| | |||||||||| ||||||||||||| |||||||       ||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  9034026 taacttccaatttttccaggaatgtcaagttatttgtcaaacactttttttaacaaatacccaagaatcaaattttaatattttcattcccggggtatgt 9034125  T
Q  192 tattcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9034126 tattcctgggaataatttgtgtttcccaaaaacaaacgcc 9034165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 93 - 228
Target Start/End: Complemental strand, 39499392 - 39499257
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39499392 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 39499293  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaac 228  Q
    |||||||  |||||||||||||||||||||| ||||    
T  39499292 attcctgaaaataatttgtgtttcccaaaaataaac 39499257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 93 - 228
Target Start/End: Complemental strand, 39502731 - 39502596
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39502731 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 39502632  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaac 228  Q
    |||||||  |||||||||||||||||||||| ||||    
T  39502631 attcctgaaaataatttgtgtttcccaaaaataaac 39502596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 44506242 - 44506120
Alignment:
Q  109 caggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatt 208  Q
    |||||| || ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  44506242 caggaatgttaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccagatatgttattcctggaaataatt 44506143  T
Q  209 tgtgtttcccaaaaacaaacgcc 231  Q
    ||||||| |||||||||||||||    
T  44506142 tgtgttttccaaaaacaaacgcc 44506120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 128018 - 128142
Alignment:
Q  105 tttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaat 204  Q
    |||| ||||| |||||||||||||| ||||||       ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  128018 tttcaaggaatgtcaagttatttgcaaaacacatcttttaacaaatattcaagaatcaaattttcatattttcattcccgggtatgttattcctgagaat 128117  T
Q  205 aatttgtgtttcccaaaaacaaacg 229  Q
    ||||||||||||| |||||||||||    
T  128118 aatttgtgtttcctaaaaacaaacg 128142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 37995568 - 37995456
Alignment:
Q  117 tcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttc 216  Q
    |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| || |||||||||||||    
T  37995568 tcaagttatttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccggataaattattcctgagattaatttgtgtttc 37995469  T
Q  217 ccaaaaacaaacg 229  Q
    |||||||||||||    
T  37995468 ccaaaaacaaacg 37995456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 9033856 - 9033946
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  9033856 tatactcatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaactttccataacttccattatt 9033946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 24072687 - 24072597
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  24072687 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 24072597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 44506427 - 44506337
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  44506427 tatacccatgtttgttatgaggttgagaaaaaaatattcttgggtataaaggttcttgggaatggagtaacttcccataacttccattatt 44506337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 56080909 - 56080819
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  56080909 tatactcatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaactttccataacttccattatt 56080819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 37995760 - 37995671
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||| |||||||||||||||||    
T  37995760 tatacccatgtttgttatgaggttgagaaaaaatattcatgggtataaaggttccttggaatggagtaacttcccataacttccattatt 37995671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 39502901 - 39502812
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  39502901 tatatccatgtttgttatgaggttgagaaaaaaaattcctaggtataaaggttcctgggaatggagtaacttcccataacttccattatt 39502812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 45620395 - 45620532
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | || ||||||| |||||||||||||| ||||||       | |||||||||| ||||||||||||| |||||||||||||| |||||||    
T  45620395 taacttccaattttcccaggaatgtcaagttatttgc-aaacactttttttagcaaatacccaggaatcaaattttcgtattttcattcccgtgtatgtt 45620493  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||| |||||||||||| |||  ||||||||||||    
T  45620494 attcctggaaataatttgtgtatcctcaaaacaaacgcc 45620532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 51790234 - 51790319
Alignment:
Q  147 aaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgcct 232  Q
    |||||| || |||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||| |||||||||||||    
T  51790234 aaatactcatgaatcaaattttcatattttcattcccatgtatgttattcatgggaataatttgtgtttccccaaaacaaacgcct 51790319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 2623184 - 2623274
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| |||||||| ||||||||| |||||||||||||||||    
T  2623184 tatacccatgtttgttatgaggttgagaaaaaaatattcctaggtataagggttcttgggaatagagtaacttcccataacttccattatt 2623274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 40590957 - 40591047
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||  ||||||||||||||||| |||||||||||||||||    
T  40590957 tatactcatgtttgttatgaggttgagaaaaaaatattcctggatataaaggttcctgggaatggagtaacttcccataacttccattatt 40591047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 29051853 - 29051943
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||| |||  |||||||||||||||||  ||||||||||||||||    
T  29051853 tatacccatatttgttatgaggttgagaaaaaaatattcctgggtataaaagttcatgggaatggagtaacttctcataacttccattatt 29051943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 26696138 - 26696047
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa--aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||||||||  ||| ||| ||||||||| |||||||||||||||||    
T  26696138 tatacccatgtttgttatgaggttgagaaaaaaaatatttctgggtataaaggttcatggaaatagagtaacttcccataacttccattatt 26696047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 127852 - 127942
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||  |||||||| |||||||| |||||||||| ||||||    
T  127852 tatactcatgtttgttatgaggttgagaaaaaaatattcctgagtataaaggttcatgggaatgaagtaacttcccataacttctattatt 127942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 51790008 - 51790098
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    ||||| |||||||||||||||||| || ||||||||||||| | ||||||||||| || ||||| ||||||||  ||||||||||||||||    
T  51790008 tatactcatgtttgttatgaggtttagaaaaaaatattcctagatataaaggtttgtgagaatgaagtaacttctcataacttccattatt 51790098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 31334950 - 31335040
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    |||||| |||||| ||||||| ||||||||||| |||||  |||||||||||||  | |||||| ||||||||||||| ||||||||||||    
T  31334950 tataccaatgtttattatgagattgagaaaaaaatattctagggtataaaggttcctaggaatgaagtaactttccatgacttccattatt 31335040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 45620223 - 45620313
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    |||||||||||||||||| |||||||| |||||||||||||| | || ||||||   || |||| |||||||| |||||||||||||||||    
T  45620223 tatacccatgtttgttataaggttgagaaaaaaatattcctgagcattaaggttcccggaaatgaagtaacttcccataacttccattatt 45620313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 54230800 - 54230752
Alignment:
Q  163 aattttcatattttcattcccgggtatgttattcctgggaataatttgt 211  Q
    ||||||||||||||||||||||| ||||||||| | | |||||||||||    
T  54230800 aattttcatattttcattcccggatatgttattaccgagaataatttgt 54230752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 59157 - 59019
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  59157 taacttccaatttttccaggaacgtcaagttatttgcaaaacacttttcttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 59058  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  59057 attcccgggaataatttgtgtttcccaaaaacaaacgcc 59019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 59315 - 59225
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||  ||||||||||||||||| |||||||||||||||||    
T  59315 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtttaaaggttcatgggaatggagtaacttcccataacttccattatt 59225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 20372509 - 20372647
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  20372509 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattctcgggtatgtt 20372608  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20372609 attcctgggaataatttgtgtttcccaaaaacaaacgcc 20372647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 31293164 - 31293026
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| | |||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31293164 taacttccaattttttcgggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 31293065  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31293064 attcctgggaataatttgtgtttcccaaaaacaaacgcc 31293026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 49142013 - 49142151
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49142013 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 49142112  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  49142113 attcctgggaataattagtgtttcccaaaaacaaacgcc 49142151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 30586202 - 30586064
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30586202 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatactcaagaatcaaattttcatattttcattcccgggtatgtt 30586103  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  30586102 attcctggaaataatttgtgtttcccaaaaacaaacgcc 30586064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 93 - 230
Target Start/End: Complemental strand, 41743263 - 41743126
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||| |||||||||||    
T  41743263 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatatccaagaatcaaattttcatattttcatttccgggtatgtt 41743164  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgc 230  Q
    |||||||| |||||||||||||||||||||||||||||    
T  41743163 attcctggaaataatttgtgtttcccaaaaacaaacgc 41743126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 47266376 - 47266253
Alignment:
Q  105 tttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaat 204  Q
    |||||||||| |||||||||||| ||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  47266376 tttccaggaatgtcaagttattttccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatgttattcctgagaat 47266277  T
Q  205 aatttgtgtttcccaaaaacaaac 228  Q
    ||||||||||||||||||||||||    
T  47266276 aatttgtgtttcccaaaaacaaac 47266253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 31577531 - 31577403
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||       ||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  31577531 taacttccaatatttccaggaatgtcaagttatttgctaaacactttttttaacaaatacccaagaatcaaatttttatattttcatttccgagtatgtt 31577432  T
Q  193 attcctgggaataatttgtgtttcccaaaa 222  Q
    ||||||| | |||||||||||| |||||||    
T  31577431 attcctgag-ataatttgtgttccccaaaa 31577403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 32031451 - 32031364
Alignment:
Q  144 aacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||  |||||||||||||||||||||||||||||||    
T  32031451 aacaaatatccaagaatcaaattttcatattttcattcccagatatgttattcctaagaataatttgtgtttcccaaaaacaaacgcc 32031364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 49141855 - 49141945
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  49141855 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 49141945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 20372336 - 20372426
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||||||||    
T  20372336 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaattgagtaacttcccataacttccattatt 20372426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 30586357 - 30586267
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||  ||||||||||||||||    
T  30586357 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttctcataacttccattatt 30586267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 47266560 - 47266470
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| | |||||||||||||||||    
T  47266560 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacctcccataacttccattatt 47266470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 44079979 - 44079868
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||||||| ||  |||||||||||| |||||||       |||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  44079979 taacttccaatttttccagtaatatcaagttatttgtcaaacactttttttaacaaatacctaagaatcaaattttcatattttcattctcgggtatgtt 44079880  T
Q  193 attcctgggaat 204  Q
    ||||||| ||||    
T  44079879 attcctgagaat 44079868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 44080148 - 44080058
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaa-atattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||  ||||||||||||||||| ||||||||| |||||||    
T  44080148 tatatccatgtttgttatgaggttgagaaaaatatattcctggatataaaggttcctgggaatggagtaacttcccataactttcattatt 44080058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 27620193 - 27620267
Alignment:
Q  157 gaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||| || | |||| |||||||| |||||||||||||||||| ||||||||||||    
T  27620193 gaatcaaattttcatattttcatttccagatatgctattcctgtgaataatttgtgtttccctaaaacaaacgcc 27620267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 31293321 - 31293230
Alignment:
Q  17 atatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatt 106  Q
    |||||| ||||||||||| ||||||||||||||| ||||| | ||||||||||||  || |||||||||||||| |||||||||||||||||    
T  31293321 atatactcatgtttgttacgaggttgagaaaaaaatattcttcggtataaaggttcatgagaatggagtaacttcccataacttccattatt 31293230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 31577688 - 31577616
Alignment:
Q  24 catgtttgttatgaggttgagaaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataa 95  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||  ||| |||| |||||||| ||||||    
T  31577688 catgtttgttatgaggttgagaaaaaatatttctgggtttaaaggttcctggaaatgaagtaacttcccataa 31577616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 22916575 - 22916665
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggttt--tgggaatggagtaactttccataacttccattatt 106  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||||| | ||  | |||||| | |||||||||| ||||||| |||||    
T  22916575 tatactcatgtttgttatgaggttgagaaaaattattcctaggtataaaagattcctaggaatgaaataactttccagaacttcccttatt 22916665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 27619993 - 27620040
Alignment:
Q  23 ccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggtt 70  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  27619993 ccatgtttgttatgaggatgagaaaaaatattcgtgggtataaaggtt 27620040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 41743417 - 41743375
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaatattcctggg 60  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  41743417 tatacacatgtttgttatgaggttgagaaaaaatattcctggg 41743375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 43175134 - 43175052
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataactt 98  Q
    ||||||||||||||||||||| ||||||| ||||||||  | | ||||||||||  |||||||| ||||||||||||||||||    
T  43175134 tatacccatgtttgttatgagattgagaaaaaaatatttttagatataaaggttcctgggaatgaagtaactttccataactt 43175052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 22916757 - 22916883
Alignment:
Q  105 tttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaat 204  Q
    |||||| ||| |||||||||||||| |||||        ||||||||| || |||||||| |||||||||||||| ||| | ||| |||||||   ||||    
T  22916757 tttccaagaatgtcaagttatttgctaaacattttttttaacaaatactcaggaatcaaaatttcatattttcatccccagatatattattccaatgaat 22916856  T
Q  205 aatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||||||| || ||||||| ||||    
T  22916857 aatttgtgttttcccaaaacaagcgcc 22916883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 8047755 - 8047839
Alignment:
Q  24 catgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||| ||||||||||  | ||||| |||||| |||| |||| ||||||||  |||||||||| |||||    
T  8047755 catgtttgttatgaggttgagaaaaaaatatttttaggtatgaaggttcttggaaatgaagtaacttctcataacttcctttatt 8047839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 8048301 - 8048364
Alignment:
Q  168 tcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||| || |||||| | | |||||||||||||||| |  |||||||||||    
T  8048301 tcatattttcattcccggataagttatttccgagaataatttgtgtttctccgaaacaaacgcc 8048364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 4653716 - 4653578
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| |||||| |||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  4653716 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatacctaagaatcaaattttcatattttcattctcgggtatgtt 4653617  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4653616 attcctgggaataatttgtgtttcccaaaaacaaacgcc 4653578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 93 - 230
Target Start/End: Complemental strand, 33756537 - 33756400
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||  ||||| |||||||||||||||||| ||       ||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  33756537 taacttccaatttttttaggaatgtcaagttatttgccaaatactttttttaacaaatacccgagaatcaaattttcatattttcattcccggatatgtt 33756438  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgc 230  Q
    |||||||| |||||||||||||||||||||||||||||    
T  33756437 attcctggaaataatttgtgtttcccaaaaacaaacgc 33756400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 24765286 - 24765199
Alignment:
Q  144 aacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||    
T  24765286 aacaaatatccaggaatcaaattttcatattttcattcccgagtatattattcctgggaataatttgtgtttccccaaaacaaacgcc 24765199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 33756690 - 33756599
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa---tattcctgggtataaaggttttgggaatggagtaactttccataacttccattatt 106  Q
    ||||| |||||||||||||||||||||||||||   ||||| |||||| ||||||| |||||||| |||||||| |||||||||||||||||    
T  33756690 tatactcatgtttgttatgaggttgagaaaaaaaaatattcatgggtacaaaggttctgggaatgaagtaacttcccataacttccattatt 33756599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 24765511 - 24765423
Alignment:
Q  20 tacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||| ||  || ||||| |||||||| |||||||||||||||||    
T  24765511 tacccatgtttgttatgaggctgagaaaaaattattcctgggtataaagattcctgagaatgaagtaacttcccataacttccattatt 24765423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 4653829 - 4653795
Alignment:
Q  72 tgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||| |||||||||||||||||    
T  4653829 tgggaatggagtaacttcccataacttccattatt 4653795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 32550411 - 32550549
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32550411 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgtt 32550510  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  32550511 attcctgtgaattatttgtgtttcccaaaaacaaacgcc 32550549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 45360313 - 45360175
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  45360313 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttgatattttcattccgaggtatgtt 45360214  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45360213 attcctgggaataatttgtgtttcccaaaaacaaacgcc 45360175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 5555336 - 5555198
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||||||| || ||||||||||| |||||||||       |||||||| |||||||||||||||| |||||||||||||||||||||||    
T  5555336 taacttccaatttttccagaaatgtcaagttattcgccaaacactttttttaacaaatatccaagaatcaaatttttatattttcattcccgggtatgtt 5555237  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    ||| ||| |||||||||||||||||||||||||||||||    
T  5555236 atttctgagaataatttgtgtttcccaaaaacaaacgcc 5555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 14236531 - 14236401
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||        |||||||||||||    
T  14236531 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcat--------tcccgggtatgtt 14236440  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14236439 attcctgggaataatttgtgtttcccaaaaacaaacgcc 14236401  T

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Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 43069078 - 43069215
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | ||| ||| || ||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43069078 taacttccaattttttcagaaatgtcaaattatttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgtt 43069177  T
Q  193 attcctgggaataatttgtgtttcccaaaaacaaacgc 230  Q
    |||||||||||||||||||||||  |||||||||||||    
T  43069178 attcctgggaataatttgtgtttttcaaaaacaaacgc 43069215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 19565307 - 19565168
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||||||||||||||       || |||||||||||||||||||||||||||||||||| |||  ||||||    
T  19565307 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaagaaatacccaagaatcaaattttcatattttcatttccgaatatgtt 19565208  T
Q  193 attcctgggaataa-tttgtgtttcccaaaaacaaacgcc 231  Q
    |||| ||||||||| ||||||||| |||||||||||||||    
T  19565207 attcttgggaataattttgtgttttccaaaaacaaacgcc 19565168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 40125554 - 40125432
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 192  Q
    ||||||||| | |||||||||| |||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40125554 taacttccaatttttccaggaatgtcaagttatatgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgtt 40125455  T
Q  193 attcctgggaataatttgtgttt 215  Q
     |||||||||||| |||||||||    
T  40125454 gttcctgggaatagtttgtgttt 40125432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 21620182 - 21620060
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnn-aacaaatacccaagaatcaaattttcatattttcattcccgggtatgt 191  Q
    ||||||||| | |||| ||||| |||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||| |||||||    
T  21620182 taacttccaatttttctaggaatgtcaagttatttgctaaacacctttttttaacaaatacccaagaatcaaattttcatattttcattcccaggtatgt 21620083  T
Q  192 tattcctgggaataatttgtgtt 214  Q
    |||||||||||||||||||||||    
T  21620082 tattcctgggaataatttgtgtt 21620060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 25473723 - 25473813
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  25473723 tatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt 25473813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 19565476 - 19565387
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||| ||||||||| |||||||||||||||||    
T  19565476 tatacccatgtttgttatgaggttgagaaaaaatattcctgggcataaaggttcgtgggaatagagtaacttcccataacttccattatt 19565387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 45360483 - 45360389
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggttt-tgggaatggagtaactttccataacttccattatttcca 110  Q
    |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  45360483 tatatccatgtttgttatgaggttgagaaaaaaatattcctaggtataaaggttcctgggaatggagtaacttcccataacttccattatttcca 45360389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 4643710 - 4643592
Alignment:
Q  110 aggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataattt 209  Q
    ||||| ||||| ||||| |||||||||       |||||||||||| |||||||||||||||||||||||||| || |||||||||| ||||||||||||    
T  4643710 aggaatgtcaaattattcgccaaacactttttttaacaaatacccatgaatcaaattttcatattttcattcctggatatgttattcttgggaataattt 4643611  T
Q  210 gtgtttcccaaaaacaaac 228  Q
    |||||||||  ||||||||    
T  4643610 gtgtttccccgaaacaaac 4643592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 3656813 - 3656723
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||  ||||||||||||||||    
T  3656813 tataccaatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcatgggaatggagtaacttctcataacttccattatt 3656723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 14236689 - 14236599
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  ||||||| ||||||||| |||||||||||||||||    
T  14236689 tatacccatgtttgttatgaggttgagaaaaaaatattcctaggtataaaggttcctgggaatagagtaacttcccataacttccattatt 14236599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 3656644 - 3656526
Alignment:
Q  105 tttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaat 204  Q
    |||||||||| |||||||||||||||||||||       |||||| |||||||||||||||||||||        ||||   ||||||||||||||||||    
T  3656644 tttccaggaatgtcaagttatttgccaaacactttttttaacaaacacccaagaatcaaattttcat--------tccctaatatgttattcctgggaat 3656553  T
Q  205 aatttgtgtttcccaaaaacaaacgcc 231  Q
    |||||||||||||||||||||||||||    
T  3656552 aatttgtgtttcccaaaaacaaacgcc 3656526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 3027813 - 3027730
Alignment:
Q  145 acaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaac 228  Q
    ||||||||||| ||||||||||||||||||||||||||  |||| |||||||||| |||||||||||||||| | |||||||||    
T  3027813 acaaatacccaggaatcaaattttcatattttcattccgaggtaagttattcctgagaataatttgtgtttcactaaaacaaac 3027730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 21620352 - 21620262
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||  | ||||| ||||||||| |||||||||||||||||    
T  21620352 tatacccatgtttgttatgaggttgagaaaaaaatattcctgagtataaaggttcctaggaatagagtaacttcccataacttccattatt 21620262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 40125724 - 40125634
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaa-aaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  || |||| ||||||||| |||||||||||||||||    
T  40125724 tatacccatgtttgttatgaggttgagaaaaaaatattccttggtataaaggttcctgagaatcgagtaacttcccataacttccattatt 40125634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 43068924 - 43069009
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccat 102  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||    
T  43068924 tatacccatgtttgttatgaggttgagaaaaaaatattcct-ggtataaaggttcctgggaatggagtaacttcccataacttccat 43069009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 32550278 - 32550357
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataa 95  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  32550278 tatacccatgtttattatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataa 32550357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 6694058 - 6694199
Alignment:
Q  93 taacttccattatttccaggaaagtcaagttatttgccaaacacnnnnnnnaacaaatacccaa-gaatcaaattttcatattttcattccc--gggtat 189  Q
    ||||||||| | ||| |||||| |||||||||||||| ||||||       ||||||||||| | ||||||||||||||||||||||||| |  ||||      
T  6694058 taacttccaattttttcaggaatgtcaagttatttgctaaacactttttttaacaaataccccacgaatcaaattttcatattttcattctcaggggttg 6694157  T
Q  190 gttattcctgggaataatttgtgtttcccaaaaacaaacgcc 231  Q
     |||||||||||||||||||||||||||| ||| ||| ||||    
T  6694158 tttattcctgggaataatttgtgtttccccaaagcaagcgcc 6694199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 5555505 - 5555415
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaa-tattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||  ||||| ||||||||| | | |||||||||||||||    
T  5555505 tatacccatgtttattatcaggttgcgaaaaaaatattcctgggtataaaggttcctgggagtggagtaacctcctataacttccattatt 5555415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 25304381 - 25304453
Alignment:
Q  144 aacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttc 216  Q
    |||||||||||| |||| | ||||| |||||||| |||||| ||| |||||| ||||||||||||||||||||    
T  25304381 aacaaatacccaggaattatatttttatattttcgttcccgagtaagttatttctgggaataatttgtgtttc 25304453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 4643882 - 4643793
Alignment:
Q  18 tatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatt 106  Q
    ||||||||| ||||||| |||||||||||||||||||| || |||||||| ||  ||| |||| ||||| ||  ||||||||||||||||    
T  4643882 tatacccatatttgttacgaggttgagaaaaaatattcttgagtataaagattcctggtaatgaagtaatttctcataacttccattatt 4643793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 6693931 - 6694025
Alignment:
Q  18 tatacccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggtt-ttgggaatggagtaactttccataacttccattatttcca 110  Q
    ||||| ||||||||||||||||||| | ||||||||||||| ||||||||  ||  || ||||| ||||||||  |||| ||| |||||||||||    
T  6693931 tatactcatgtttgttatgaggttgtgaaaaaaatattcctaggtataaaaattcatgtgaatgaagtaacttctcatacctttcattatttcca 6694025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 25304206 - 25304284
Alignment:
Q  23 ccatgtttgttatgaggttgag-aaaaaatattcctgggtataaaggt-tttgggaatggagtaactttccataacttc 99  Q
    |||||||||||||||||||||| |||||||||||||  ||| ||||||  ||| ||||| ||||||||  |||||||||    
T  25304206 ccatgtttgttatgaggttgagaaaaaaatattcctaagtaaaaaggtacttgtgaatgaagtaacttctcataacttc 25304284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 35371964 - 35372014
Alignment:
Q  163 aattttcatattttcattcccgggtatgttattcctgggaataatttgtgt 213  Q
    |||||||||||||| |||  |||||| |||||||||||| |||||||||||    
T  35371964 aattttcatatttttattttcgggtaagttattcctgggtataatttgtgt 35372014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 16296884 - 16296945
Alignment:
Q  168 tcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacg 229  Q
    |||||||||||||||||  || |||||||||  |||||||||||||||| |  |||||||||    
T  16296884 tcatattttcattcccgaataagttattcctaagaataatttgtgtttctccgaaacaaacg 16296945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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