View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14969_low_12 (Length: 418)
Name: NF14969_low_12
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 37058468 - 37058870
Alignment:
| Q |
1 |
gccttaatctcattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgcaattggactggtg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37058468 |
gccttaatcttattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgcaattggactggtg |
37058567 |
T |
|
| Q |
101 |
tcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggtaacatgtcctctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37058568 |
tcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggtaacatgtcctctct |
37058667 |
T |
|
| Q |
201 |
tcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctatataatttgagagttctaaatatgagttccaacaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37058668 |
tcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctctataatttgagagttctaaatatgagttccaacaga |
37058767 |
T |
|
| Q |
301 |
tttgaaggaatgatgtttccttcaaatcttaccaatttagatgagcttcaaattcttgatttgtcatcaaacaagattgtaagcagaattcctgaacaca |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37058768 |
tttgaaggaatcatgtttccttcaaatcttaccaatttagatgagcttcaaattcttgatttgtcatcaaacaagattgtaagcagaattcctgaacaca |
37058867 |
T |
|
| Q |
401 |
tca |
403 |
Q |
| |
|
||| |
|
|
| T |
37058868 |
tca |
37058870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 37065946 - 37066348
Alignment:
| Q |
1 |
gccttaatctcattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgcaattggactggtg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37065946 |
gccttaatcttattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgcaattggactggtg |
37066045 |
T |
|
| Q |
101 |
tcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggtaacatgtcctctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37066046 |
tcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggtaacatgtcctctct |
37066145 |
T |
|
| Q |
201 |
tcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctatataatttgagagttctaaatatgagttccaacaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37066146 |
tcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctctataatttgagagttctaaatatgagttccaacaga |
37066245 |
T |
|
| Q |
301 |
tttgaaggaatgatgtttccttcaaatcttaccaatttagatgagcttcaaattcttgatttgtcatcaaacaagattgtaagcagaattcctgaacaca |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37066246 |
tttgaaggaatcatgtttccttcaaatcttaccaatttagatgagcttcaaattcttgatttgtcatcaaacaagattgtaagcagaattcctgaacaca |
37066345 |
T |
|
| Q |
401 |
tca |
403 |
Q |
| |
|
||| |
|
|
| T |
37066346 |
tca |
37066348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 41908570 - 41908628
Alignment:
| Q |
215 |
tgcaggataaccagttcacaggattcattcctgagcaaattaccaatctatataatttg |
273 |
Q |
| |
|
||||||||||| | ||||||||||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
41908570 |
tgcaggataacaaactcacaggattcattcctaaccaaattaccaatttatataatttg |
41908628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University