View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_15 (Length: 388)
Name: NF14969_low_15
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 12924647 - 12925014
Alignment:
| Q |
18 |
aatgtgagtctcacacagttcacaatttcacatggccttcctgtcccataaaaactgatcatggttcattttcccaagcacactatgcttatactatata |
117 |
Q |
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| T |
12924647 |
aatgtgagtctcacacagttcacaatttcacatggccttcctgtcccataaaaactgatcatggttcattttcccaagcacactatgcttatactatata |
12924746 |
T |
|
| Q |
118 |
tagaattaaatactaatactaggaccaagtgaatccaccaaaatccaacctcatatactttattattaaggaatagtactactaatatgtagagcaatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12924747 |
tagaattaaatactaatactaggaccaagtgaatccaccaaaatccaacctcatatactttattattaaggaatggtactactaatatgtagagcaatca |
12924846 |
T |
|
| Q |
218 |
accacagagttcaaacagcaacataatcaatgt---ctactaattaaatgtagcaaaagaaattttaaataaaatgttaaaaccattaatttttacagcc |
314 |
Q |
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|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12924847 |
ac--cagagttcaaacagcaacatgatcaatgtctactactaattaaatgtagcaaaagaaattataaataaaatgttaaaaccattaatttttacagcc |
12924944 |
T |
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| Q |
315 |
tagtaggttaaaatgtggccaactaattggaggcacaattttcttttcacctttgggtttcttctcactc |
384 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12924945 |
tagtaggttaaaatgtggccaactaattggaggcacaattttcttttcacctttgggtttcttttcactc |
12925014 |
T |
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