View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_16 (Length: 372)
Name: NF14969_low_16
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 36 - 362
Target Start/End: Complemental strand, 39400521 - 39400195
Alignment:
| Q |
36 |
tagcagcgtaacaaactcaactttctttcttctctagacacttcttcctcctccatttagtctcttctatctatctcccataacaagaagataatatcat |
135 |
Q |
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| T |
39400521 |
tagcagcgtaacaaactcaactttctttcttctctagacacttcttcctcctccatttactctcttctatctatctcccataacaagaagataatatcat |
39400422 |
T |
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| Q |
136 |
caaccactttttgtattgtaagcttctaaacttcattctcattttttatacattacttcatgattcagttttcatagttcaatcatatattttgtttctc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39400421 |
caaccactttttgtattgtaagcttctaaacttcattctcattttttatacattacttcatgattcagttttcatagttcaatcatatattttgtttctc |
39400322 |
T |
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| Q |
236 |
aaactgtaatctattcattacttcatgatttattagttagttagagctaataaatgtgtgtattattgttataatgttgaaacattgatttacccctgtt |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39400321 |
aaactgtaatctattcattacttcatgatttattagttagttagagctaataaatgtgtgtattattgttataatgttgaaacattgatttacccctgtt |
39400222 |
T |
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| Q |
336 |
tataataaatgctatgtattcttcatc |
362 |
Q |
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||||||||||||||||||||||||||| |
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| T |
39400221 |
tataataaatgctatgtattcttcatc |
39400195 |
T |
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