View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_17 (Length: 367)
Name: NF14969_low_17
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 46129100 - 46129443
Alignment:
| Q |
13 |
taatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaa-tgttagaaggatagagtagaagaactaa |
111 |
Q |
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| T |
46129100 |
taatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaaatgttagaaggatagagtagaagaactaa |
46129199 |
T |
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| Q |
112 |
ttattctatgatgttaagataccaaaaatttgttgtattgttggaaaattcaaaattgtaattaatactttcatgttttagaatttagggtaactatgat |
211 |
Q |
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| T |
46129200 |
ttattccatgatgttaagataccaaaaatttgttgtattgttggaaaattcaaaattgtaattaatactttcatgttttagaatttagggtaactatgat |
46129299 |
T |
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| Q |
212 |
ag----ttgttccatatcaagagcatagccatgattaaggagcggtaccaattgccaatataagaggctttaacagaattctgttg-nnnnnnnggtcca |
306 |
Q |
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| T |
46129300 |
atataattgttccatatcaagagcatagccatgattaaggagcggtaccaattgccaatataagaggctttaacagaattctgttgaaaaaaaaggtcca |
46129399 |
T |
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| Q |
307 |
tgttagagctagagctacatataatgcatgtcggacgaccctta |
350 |
Q |
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| T |
46129400 |
tgttagagctagagctacatataatgcatgtcggacgaccctta |
46129443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 350
Target Start/End: Original strand, 46701912 - 46702257
Alignment:
| Q |
6 |
gggtagataatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaatgttagaaggatagagtagaag |
105 |
Q |
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| T |
46701912 |
gggtaaataatactccattagtaat-gaaaatggttaataatatgactctaacgaaatatgccaaacttgacacttaatgttagaaggatagattagaag |
46702010 |
T |
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| Q |
106 |
aactaattattctatg--atgttaagataccaaaaatttgttgtattgttggaaaattcaaaattgtaattaatactttcatgttttagaatttagggta |
203 |
Q |
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| T |
46702011 |
aactaattattctatgatatgttaagataccaaaaatttgttgtattgttgg-------aaaattgtaattaatactttcatgttttagaatttagggta |
46702103 |
T |
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| Q |
204 |
actatgatagttgttccatatcaagagcatagccatgattaaggagcggtaccaattgccaatataagaggctttaacagaattctgttg-------nnn |
296 |
Q |
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| T |
46702104 |
actatgataattgttccatatcaagagcatagccatgattaaggagcgataccaattgccaatataagaggctttatcagaattctattgagagagaaaa |
46702203 |
T |
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| Q |
297 |
nnnnggtccatgttagagctagagctacatataatgcatgtcggacgaccctta |
350 |
Q |
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| T |
46702204 |
aaaaagtccattttagagttagagctacatataatgcatgtcggacgaccctta |
46702257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 46123110 - 46123256
Alignment:
| Q |
13 |
taatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaatgttagaaggatagagtagaagaactaat |
112 |
Q |
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|||| |||||||||||||| ||||||| |||||||||| | |||||| ||| |||||||||| | | |||| ||| ||| ||||| ||||||||| |
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| T |
46123110 |
taatgctccattagtaatttaaaatggcagataatatgacacaaacgaattattctaaacttgaaattaaatg--agatggagggagtaaaagaactaac |
46123207 |
T |
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| Q |
113 |
tattctatg--atgttaagataccaaaaatttgttgtattgttggaaaat |
160 |
Q |
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| T |
46123208 |
tagtctatgatatgttaagataccaaaaacttg-tgtattattggaaaat |
46123256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 46123358 - 46123395
Alignment:
| Q |
301 |
ggtccatgttagagctagagctacatataatgcatgtc |
338 |
Q |
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| T |
46123358 |
ggtccattttagacctagagctacatataatgcatgtc |
46123395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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