View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_18 (Length: 361)
Name: NF14969_low_18
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 34774575 - 34774911
Alignment:
| Q |
15 |
acaaacacggcgacatggggatacgatccaaagaccaactccacgataacacctttatctcatccacaatctcgaccacctccgtaataagattattaaa |
114 |
Q |
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||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| |
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| T |
34774575 |
acaaacacggcgatatatggatacgatccaaagaccaacgccacgataacacctttatctcatccacaatctcgcccacctatgtaatttgattattaaa |
34774674 |
T |
|
| Q |
115 |
gactcgatcatttctagctttccatagcacccaaatcgtagtgtgccaaataagccttaaaccattacgagttctcttattcctctcccctccgcactaa |
214 |
Q |
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||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| || |
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| T |
34774675 |
tactcgattattcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaa |
34774774 |
T |
|
| Q |
215 |
ctcttccaaaggataaaaaggttagggggaattaacaataacttctcccaccacgccaatacgccttgccgcactctaccggccacctcacaatggagaa |
314 |
Q |
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| T |
34774775 |
cactcccaaaggatgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagcaacctcacaatggagaa |
34774874 |
T |
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| Q |
315 |
aaagatgcaatgatgattcttcccccctttcacataa |
351 |
Q |
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| T |
34774875 |
atagatgaattgatgattcgtccaccctttcacataa |
34774911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 42748761 - 42749097
Alignment:
| Q |
15 |
acaaacacggcgacatggggatacgatccaaagaccaactccacgataacacctttatctcatccacaatctcgaccacctccgtaataagattattaaa |
114 |
Q |
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| T |
42748761 |
acaaacacggcgatataagaatacgatccaaagaccaacgccacgatatcacctttatctcatccacaatctcgcccacctccgtaattcgattattaaa |
42748860 |
T |
|
| Q |
115 |
gactcgatcatttctagctttccatagcacccaaatcgtagtgtgccaaataagccttaaaccattacgagttctcttattcctctcccctccgcactaa |
214 |
Q |
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||||||| ||| ||||||||||||| |||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||| | || |
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| T |
42748861 |
tactcgattattcctagctttccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagttctcttattcctctcccctccgctccaa |
42748960 |
T |
|
| Q |
215 |
ctcttccaaaggataaaaaggttagggggaattaacaataacttctcccaccacgccaatacgccttgccgcactctaccggccacctcacaatggagaa |
314 |
Q |
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| T |
42748961 |
cactcccaaagaatgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccacactctaccggcaacctcacaatgaagaa |
42749060 |
T |
|
| Q |
315 |
aaagatgcaatgatgattcttcccccctttcacataa |
351 |
Q |
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| T |
42749061 |
aaagatgaattgaggatccgtccaccctttcacataa |
42749097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 35024454 - 35024690
Alignment:
| Q |
15 |
acaaacacggcgacatggggatacgatccaaagaccaactccacgataacacctttatctcatccacaatctcgaccacctccgtaataagattattaaa |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
35024454 |
acaaacacggcgacataaggatacgatccaaagaccaacgccacgataacacctttatctcatccacaatctcgcccacctccgtaatttgattattaaa |
35024553 |
T |
|
| Q |
115 |
gactcgatcatttctagctttccatagcacccaaatcgtagtgtgccaaataagccttaaaccattacgagttctcttattcctctcccctccgcactaa |
214 |
Q |
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||||||| ||| ||||||||||||| ||||||||||||| | ||||||||||||||||| | |||||||||||||||||||||||||||||| || || |
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| T |
35024554 |
tactcgattattcctagctttccataacacccaaatcgtaatatgccaaataagccttaattcgttacgagttctcttattcctctcccctccgaaccaa |
35024653 |
T |
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| Q |
215 |
ctcttccaaaggataaaaaggttagggggaattaaca |
251 |
Q |
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| T |
35024654 |
cactcccaaaggatgaagaagttagggggaattaaca |
35024690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 30656342 - 30656386
Alignment:
| Q |
121 |
atcatttctagctttccatagcacccaaatcgtagtgtgccaaat |
165 |
Q |
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| T |
30656342 |
atcatttctcgctttccacaagacccaaatcgtagtgtgccaaat |
30656386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 38553146 - 38553102
Alignment:
| Q |
121 |
atcatttctagctttccatagcacccaaatcgtagtgtgccaaat |
165 |
Q |
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|||||| ||||||||||| | |||||||||||||||||||||||| |
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| T |
38553146 |
atcattcctagctttccacaacacccaaatcgtagtgtgccaaat |
38553102 |
T |
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