View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_22 (Length: 336)
Name: NF14969_low_22
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 42913888 - 42913563
Alignment:
| Q |
11 |
cagagaccaaagaagaatcttcagctgaagaagccaaaccagtggttaaagctgaggctaaagaggtggtagaagaagttgttgttcctgcgaaagatac |
110 |
Q |
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| T |
42913888 |
cagaaaccaaagaagaatcttcagctgaagaagccaaacctttggttaaagctgagactaaagaggtggtagaagaagttgttgtgcctgtgaaagatac |
42913789 |
T |
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| Q |
111 |
agaagaggcaacaaagaaggaagaacaaaccgagacaaaggaacctgtcgaggaaacaaaagaaaatgttgattcggttaatgttgaggaaacgaaagaa |
210 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||| |
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| T |
42913788 |
agaagaggaaacaaagaaggaagaacaaaccgagacaaaggaacctgtcgaggaaacaaaagaaaacggtaattctcttaatgttgaggaaacgaaagaa |
42913689 |
T |
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| Q |
211 |
aacggtgattctgttgttgaggttgttcaagaaaaaccagctgaagaatctgagacagaacatgttgttaaggatgagaatgtggtagctgagcctgaaa |
310 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
42913688 |
aacggtgattctgttgttgaggctgttcaggaaaaaccagctgaagagtctgagacagtaaatgttgttaaggatgagaatgtggtagctgagcctgaaa |
42913589 |
T |
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| Q |
311 |
ctaaggacaatgttaagacagaagaa |
336 |
Q |
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| T |
42913588 |
ctaaggacaatgttaagacagaagaa |
42913563 |
T |
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