View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_24 (Length: 328)
Name: NF14969_low_24
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 42955157 - 42955442
Alignment:
| Q |
16 |
ttcaccacatctaaacttgttatgtatttctctttccttttgaacaataagagatcacattttaccctcacgtgaaaattacgtattagagaatacatac |
115 |
Q |
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| T |
42955157 |
ttcaccacatctaaacttgttatgtatttctctttccttttgaacaataagagatcacattttaccctcacgtgaaaattacgtattagagaatacatac |
42955256 |
T |
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| Q |
116 |
cagttgtgcatgtctatatttgttcgatatactctttgttatcgttgaagtttatacaaaacccattaaatcacgagtacctcannnnnnnggggtcaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
42955257 |
cagttgtgcatgtctatatttgttcgatatactctttgttatcgttgaagtttatacaaaacccattaaatcatgagtacctcattttttt-gggtcaac |
42955355 |
T |
|
| Q |
216 |
tagtctaatagttaaaattcaccttttgaaggtgattaaacgtgaaacatattatttgaatcttatctcttgcatatataatgcatg |
302 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
42955356 |
tagtctagtagttaaaattcaccttttgaaggtggttaaacgtgaaacatattattcgaatctcatctcttgcatatataatgcatg |
42955442 |
T |
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