View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_25 (Length: 326)
Name: NF14969_low_25
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_25 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 25698147 - 25698454
Alignment:
| Q |
1 |
aagtatggagcaatatcaacgaatcagctcaaacaatttgtgaacgagcaagttctctccttactagttggttgaatgtttaagttatgaggagtcaaac |
100 |
Q |
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| T |
25698147 |
aagtatggagcaatatcaacgaatcagctcaaacaatttgtgaacgagcaagttctctccttactagttggttgaatgtccaagttatgaggagtcaaac |
25698246 |
T |
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| Q |
101 |
tataaagcaatcaaacactaatggtaagatgcaatgacgtaaaccaagtccttgaagatacaaatgtaaggtaaatgccacattttctcatgctccgaac |
200 |
Q |
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| T |
25698247 |
tataaagcaatcaaacactaatggtaagatgcaatgacgtaaaccgagtccttgaagatacaagtgtaaggtaaatgccacattttctcatgctctgaac |
25698346 |
T |
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| Q |
201 |
atagttgatcttgatatatgtagtcaagacgatgaaggtcgttttgtgctggccaaaacagagtggttggcgcctctccttgatgtggacttaggggagg |
300 |
Q |
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| T |
25698347 |
aaagttgatcttgatatatgtattcaagacgatgaaggtcgttttgtgctggccaaaacagagtggttggcgcctctccttgatgtggacttaggggagg |
25698446 |
T |
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| Q |
301 |
ccctatgt |
308 |
Q |
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| T |
25698447 |
ccctatgt |
25698454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 35208291 - 35208031
Alignment:
| Q |
13 |
atatcaacgaatcagctcaaacaatttgtgaacgagcaagttctctccttactagttggttgaatgtttaagttatgaggagtcaaactataaagcaatc |
112 |
Q |
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| T |
35208291 |
atattaacgaatcagcttaaacaatttgtgaacaagaaaactttcttcttaatagtcggttgaatgcctaa-ttatgcgtaatcaaactactgagcaatc |
35208193 |
T |
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| Q |
113 |
aaacactaatggtaagatgcaatgacgtaaaccaagtccttgaagatacaaatgtaaggtaaatgccacattttctcatgctccgaacatagttgatctt |
212 |
Q |
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| T |
35208192 |
gaatactaatggtgaaatgcaatggcataaactgagtcctcacatatacaaatgtaatgtagctacctccttttcttatgttatgaacaaagttggtctt |
35208093 |
T |
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| Q |
213 |
gatatatgtagtcaagacgatgaaggtcgttttgtgctggccaaaacagagtggttggcgcc |
274 |
Q |
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| T |
35208092 |
gatgtatgcatttgagatgatgacggttgttttgtgttggccaaaacaagatggttggcgcc |
35208031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 9323 - 9271
Alignment:
| Q |
219 |
tgtagtcaagacgatgaaggtcgttttgtgctggccaaaacagagtggttggc |
271 |
Q |
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|||| |||||| |||||||||||||||||||||| |||||| ||||||||||| |
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| T |
9323 |
tgtattcaagatgatgaaggtcgttttgtgctggtcaaaactgagtggttggc |
9271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 11453758 - 11453820
Alignment:
| Q |
238 |
gtcgttttgtgctggccaaaacagagtggttggcgcctctccttgatgtggacttaggggagg |
300 |
Q |
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| T |
11453758 |
gtcgttttgtgttggccaaaacatagtggtcgactccactccttgatgtggatttaggggagg |
11453820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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