View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_26 (Length: 325)
Name: NF14969_low_26
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 14823679 - 14823786
Alignment:
| Q |
71 |
attttatattgtaattatgttaggattaattagcatttatatgtaattatt--ctttgtctccaatcctataatataaataggagctcttgcttgtattt |
168 |
Q |
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| T |
14823679 |
attttatattgtaattacgttaggattaattagcttttatatgtaattattttctttgtctcctatcctataatataaataggagctcttcattgtattt |
14823778 |
T |
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| Q |
169 |
gatataca |
176 |
Q |
| |
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|||||||| |
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| T |
14823779 |
gatataca |
14823786 |
T |
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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 16501349 - 16501455
Alignment:
| Q |
120 |
ttctttgtctccaatcctataatataaataggagctcttgcttgtatttg--atatacattcagaaaatatataaatgtctattcagtttatatcttcct |
217 |
Q |
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||||||||||| ||||||||| ||||||||||| || |||||| ||| |||| |||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
16501349 |
ttctttgtctctaatcctatagtataaataggacgactaccttgtacttgaaatattcattcagaaaatattcaaatgtctattcagtatatatcttcct |
16501448 |
T |
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| Q |
218 |
gagtttc |
224 |
Q |
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||||||| |
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|
| T |
16501449 |
gagtttc |
16501455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 16508347 - 16508401
Alignment:
| Q |
170 |
atatacattcagaaaatatataaatgtctattcagtttatatcttcctgagtttc |
224 |
Q |
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|||| ||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
16508347 |
atattcattcagaaaatatacaaatgtctatttagtctatatcttcctgagtttc |
16508401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 29993111 - 29993164
Alignment:
| Q |
74 |
ttatattgtaattatgttaggattaattagcatttatatgtaattattctttgt |
127 |
Q |
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|||||||||||||||| ||||| || |||| |||||| |||||||||| ||||| |
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|
| T |
29993111 |
ttatattgtaattatgctaggagtagttagtatttatgtgtaattattttttgt |
29993164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 2510996 - 2511045
Alignment:
| Q |
174 |
acattcagaaaatatataaatgtctattcagtttatatcttcctgagtttc |
224 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
2510996 |
acattcagaaaatatacaaa-gtctattcagtttatatcttcctgagtttc |
2511045 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 2510912 - 2510955
Alignment:
| Q |
78 |
attgtaattatgttaggattaattagcatttatatgtaattatt |
121 |
Q |
| |
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||||||| ||||||||||||||||||| ||||| |||||||||| |
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|
| T |
2510912 |
attgtaaatatgttaggattaattagcctttatgtgtaattatt |
2510955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 102
Target Start/End: Original strand, 2511468 - 2511499
Alignment:
| Q |
71 |
attttatattgtaattatgttaggattaatta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
2511468 |
attttatattgtaattatgttaggattaatta |
2511499 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 27684457 - 27684515
Alignment:
| Q |
120 |
ttctttgtctccaatcctataatataaataggagctcttgcttgtatttgatatacatt |
178 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||||||||||||||| || |||| ||||| |
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|
| T |
27684457 |
ttctttgttttcaatcctataatataattaggagctcttgcttgtgttagatacacatt |
27684515 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 53018883 - 53018851
Alignment:
| Q |
120 |
ttctttgtctccaatcctataatataaatagga |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
53018883 |
ttctttgtctccaatcctataatataaatagga |
53018851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 3084417 - 3084389
Alignment:
| Q |
71 |
attttatattgtaattatgttaggattaa |
99 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
3084417 |
attttatattgtaattatgttaggattaa |
3084389 |
T |
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