View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_29 (Length: 311)
Name: NF14969_low_29
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 26710882 - 26710973
Alignment:
| Q |
204 |
aaaatttgcaaagaaaaccaatagcataatacatttaagaagaataaa-gagtgtaatacacaacaacaatcaacaaaggagatacataatc |
294 |
Q |
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| T |
26710882 |
aaaatttgcaaagaaaaccaatagcataatacatttaagaagtataaaagagtgtaatacacaacaacaatcaacaaaggagatacataatc |
26710973 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 26710685 - 26710783
Alignment:
| Q |
1 |
attcaaaatattaacaaggatgtacataaacacaatagatgcaagactaacacatgacccacatggttagaatggacagacctactctgataccactaa |
99 |
Q |
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| T |
26710685 |
attcaaaatattaagaaggatgtacacaaacacaacagatgcaagactgacacatgacccacacgatctgaatgaacagacctgctctgataccactaa |
26710783 |
T |
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