View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_3 (Length: 576)
Name: NF14969_low_3
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 4e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 279 - 464
Target Start/End: Original strand, 43170023 - 43170209
Alignment:
| Q |
279 |
aatagagtgtaaaa-atttaatcaaatagcaaatcagtgacactgtcaaacttgcagctcgctagtaacttacttcaaattatgtaactagtctattttc |
377 |
Q |
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| T |
43170023 |
aatagagtgtaaaaaatttaatcaaatagcaaatcagtgacactgtcaaacttgcagctcgctagtaacttacttcaaattatgtaactaatctattttc |
43170122 |
T |
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| Q |
378 |
taatttatacaaggcagcatattagaaaatcaaaatacttataaccacatgttcaaccagaaatcttataccggtactggtgggaat |
464 |
Q |
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| T |
43170123 |
taatttatacaagacagcatattagaaaataaaaatacttataaccacatgttcaaccagaaatcttataccggtactggtgggaat |
43170209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 499 - 560
Target Start/End: Original strand, 43170216 - 43170277
Alignment:
| Q |
499 |
ttatgttaaagttggtcagtcatcttgagttacctgtaagaaaagtgagctacttatcggat |
560 |
Q |
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| T |
43170216 |
ttatgttaaagttggtcagtcatcttgagttacctgtaagaaaagtgagctgcttatcggat |
43170277 |
T |
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