View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_30 (Length: 306)
Name: NF14969_low_30
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 14580909 - 14580629
Alignment:
| Q |
10 |
aatatcttcaacctcaaacatcaaatcctaacaaaaacacacacactgagaaacacattagcaatagcaatggaaggttcagtacaaattaatgtacctg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14580909 |
aatatcttcaacctcaaacatcaaatcctaacaaaaacacacacactgagaaacacattagcaatagcaatggaaggttcagtacaaattaatgtacttg |
14580810 |
T |
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| Q |
110 |
aatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttaca |
209 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14580809 |
aatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttaca |
14580710 |
T |
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| Q |
210 |
agctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttacactgataattatccgaaatg |
290 |
Q |
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| T |
14580709 |
agctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatg |
14580629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 71 - 290
Target Start/End: Original strand, 14542739 - 14542958
Alignment:
| Q |
71 |
caatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaattataga |
170 |
Q |
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| T |
14542739 |
caatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattataga |
14542838 |
T |
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| Q |
171 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttac |
270 |
Q |
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| T |
14542839 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttac |
14542938 |
T |
|
| Q |
271 |
actgataattatccgaaatg |
290 |
Q |
| |
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||||||||||| || ||||| |
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| T |
14542939 |
actgataattacccaaaatg |
14542958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 67 - 258
Target Start/End: Complemental strand, 35623182 - 35622991
Alignment:
| Q |
67 |
ttagcaatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaatta |
166 |
Q |
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|||| |||||||||||||||| | || |||||| ||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| | |
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| T |
35623182 |
ttagtaatagcaatggaaggtccggtgcaaattgatgtacctgaatctcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatca |
35623083 |
T |
|
| Q |
167 |
tagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattc |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |
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| T |
35623082 |
tagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaacaatcattc |
35622991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 71 - 290
Target Start/End: Complemental strand, 34264065 - 34263852
Alignment:
| Q |
71 |
caatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaattataga |
170 |
Q |
| |
|
||||||||||||| ||||||| |||||| | |||| | ||||||||||| | ||||| | ||||||| ||| || | ||||||||| ||| ||||| |
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| T |
34264065 |
caatagcaatggagggttcagcacaaatcactgtatcggaatctcattcaa---ttgaggaggaaaagacaccgatgt---catgggatgaaataataga |
34263972 |
T |
|
| Q |
171 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttac |
270 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
34263971 |
aaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacaacagtcattcataagcatttac |
34263872 |
T |
|
| Q |
271 |
actgataattatccgaaatg |
290 |
Q |
| |
|
||||||||||| || ||||| |
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| T |
34263871 |
actgataattacccaaaatg |
34263852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 35622810 - 35622770
Alignment:
| Q |
250 |
caatcattcataagcatttacactgataattatccgaaatg |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||| || ||||| |
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| T |
35622810 |
caatcattcataagcatttacactgataattacccaaaatg |
35622770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 290
Target Start/End: Original strand, 37599764 - 37599906
Alignment:
| Q |
148 |
ttatcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcac |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| || |||||||| || |||||||||||||| ||| |||| |||||||||||||||| |
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| T |
37599764 |
ttatcatgggatgaaattatagaaatttttttatcaaattttggttgaatggatttatttcaagctgttcttgtagcaattgctatgttctttgatgcac |
37599863 |
T |
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| Q |
248 |
aacaatcattcataagcatttacactgataattatccgaaatg |
290 |
Q |
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|| | ||||| ||||||||||||||||||||||| || ||||| |
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| T |
37599864 |
aagagtcatttataagcatttacactgataattacccaaaatg |
37599906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 37605482 - 37605534
Alignment:
| Q |
238 |
tttgatgcacaacaatcattcataagcatttacactgataattatccgaaatg |
290 |
Q |
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|||||||||||||||||||||| | |||||||| ||||||||| || ||||| |
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| T |
37605482 |
tttgatgcacaacaatcattcacaggcatttaccttgataattacccaaaatg |
37605534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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