View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14969_low_34 (Length: 280)

Name: NF14969_low_34
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14969_low_34
NF14969_low_34
[»] chr7 (6 HSPs)
chr7 (7-280)||(10999891-11000164)
chr7 (7-164)||(10973489-10973646)
chr7 (7-199)||(11041014-11041206)
chr7 (11-202)||(7846797-7846988)
chr7 (11-185)||(11073312-11073486)
chr7 (11-79)||(11059637-11059705)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 280
Target Start/End: Original strand, 10999891 - 11000164
Alignment:
Q  7 attcttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagatatttgtcacaattgcgagtggaaaata 106  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10999891 attcttctgcagctttacatggtcaggaaatcctaatcgtcattatattgaagtttataagcaaaaacgagatatttgtcacaattgcgagtggaaaata 10999990  T
Q  107 aataaaactggtggatatttatgggggaagttttttccatggaatagtgttcaaataatgggtgcaaataatacatccagtatgtaactttctcatattt 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  10999991 aataaaactggtggatatttatgggggaagttttttccttggaatagtgttcaaataatgggtgcaaataatacatctaatatgtaactttctcatattt 11000090  T
Q  207 cttggattataaataatacaaataccacgggaccatttgtataatgttgcttatgatcataatatatcttcttc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11000091 cttggattataaataatacaaataccacgggaccatttgtataatgttgcttatgatcataatatatcttcttc 11000164  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 10973489 - 10973646
Alignment:
Q  7 attcttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagatatttgtcacaattgcgagtggaaaata 106  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||   ||| | ||  |||||||||||||     
T  10973489 attcttttgcagctttacgtggccaggaaatcccgatcgtcattatattgaagtttataagcaaagacgagatggatgtgaaaaccgcgagtggaaaatg 10973588  T
Q  107 aataaaactggtggatatttatgggggaagttttttccatggaatagtgttcaaataa 164  Q
    | ||||||||||||||||||||||||| |||||| ||| |||||||||||| ||||||    
T  10973589 attaaaactggtggatatttatgggggcagttttatccttggaatagtgttgaaataa 10973646  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 11041206 - 11041014
Alignment:
Q  7 attcttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagatatttgtcacaattgcgagtggaaaata 106  Q
    |||||||||||| |||||||||| ||||| |||  ||||||||||||||||| |||| |  ||||||||||||   ||  | |    | ||||||||||     
T  11041206 attcttctgcagttttacatggcaaggaagtccatatcgtcattatattgaaatttacagtcaaaaacgagatgggtgcaatagcctccagtggaaaatg 11041107  T
Q  107 aataaaactggtggatatttatgggggaagttttttccatggaatagtgttcaaataatgggtgcaaataatacatccagtatgtaactttct 199  Q
    |||||||||||||||| |  || |||| |||| | ||| |||| ||||||| ||||||||  |||||||  ||||||||   |||||||||||    
T  11041106 aataaaactggtggatttaaatcggggcagttctatccttggagtagtgttgaaataatgcatgcaaatggtacatccaagttgtaactttct 11041014  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 7846797 - 7846988
Alignment:
Q  11 ttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagatatttgtcacaattgcgagtggaaaataaata 110  Q
    ||||||||||||||||||| ||||| |||  ||||||||||||||||  |||| |  ||||||||||||   ||  | |    | |||||||||| ||||    
T  7846797 ttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagatggctgcaatagcctccagtggaaaatgaata 7846896  T
Q  111 aaactggtggatatttatgggggaagttttttccatggaatagtgttcaaataatgggtgcaaataatacatccagtatgtaactttctcat 202  Q
     ||||||||||| |  |||||||||||  | ||| ||||| |||||| ||||||||| |||||| | ||||||||  || ||| ||||||||    
T  7846897 gaactggtggatctaaatgggggaagtggtatccttggaaaagtgttgaaataatggatgcaaacagtacatccaaaatttaattttctcat 7846988  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 11073312 - 11073486
Alignment:
Q  11 ttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagatatttgtcacaattgcgagtggaaaataaata 110  Q
    |||||||||||||||||||  |||| |||  ||||||||||||||||  |||| |  ||||||||||||   ||  |  ||    |||||||||| ||||    
T  11073312 ttctgcagctttacatggcagggaagtccatatcgtcattatattgatatttacagtcaaaaacgagatggctgcgatgatcttcagtggaaaatgaata 11073411  T
Q  111 aaactggtggatatttatgggggaagttttttccatggaatagtgttcaaataatgggtgcaaataatacatcca 185  Q
     ||||||||||| |  |||||||||||  | ||| ||||| ||| || ||||||||| |||||||| ||||||||    
T  11073412 gaactggtggatctaaatgggggaagtggtatccttggaaaagtattgaaataatggatgcaaatagtacatcca 11073486  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 11059637 - 11059705
Alignment:
Q  11 ttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagat 79  Q
    ||||||||||||||||||| ||||| |||  ||||||||||||||||  |||| |  ||||||||||||    
T  11059637 ttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagat 11059705  T

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