View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_35 (Length: 276)
Name: NF14969_low_35
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 85 - 259
Target Start/End: Original strand, 25995646 - 25995820
Alignment:
| Q |
85 |
ttaaattttgcaatgtatccttattgtattaaatgcttgaattctctaaacatagtaatgtaataaatgaacacatttctactccctgcctccttctctt |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25995646 |
ttaaattttgcaatgtatccttattgtattaaatgcttgaattctctaaacatagtaatgtaataaatgaacacattactactccctgcctccttctctt |
25995745 |
T |
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| Q |
185 |
ttgcacaactgatacgaatctcagaagnnnnnnnttaaggataaattattttgttggtcctctaactatttaatt |
259 |
Q |
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| T |
25995746 |
ttgcacaactgatacaaatctcataagaaaaaaattaaggataaattacctttttggtcctctaactatttaatt |
25995820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 25995389 - 25995460
Alignment:
| Q |
23 |
gtgattggtgatgactgcatttggaatcctgcacggtatgttatggcagtctagttggtgcattaaattttg |
94 |
Q |
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| T |
25995389 |
gtgattggtgatgtctgcatttggaatcctgcacggtatgttatggcagtctagttggtgcattaaattttg |
25995460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 1432129 - 1432167
Alignment:
| Q |
221 |
aaggataaattattttgttggtcctctaactatttaatt |
259 |
Q |
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| T |
1432129 |
aaggataaattacttttttggtcctctaactatttaatt |
1432167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 45277050 - 45277010
Alignment:
| Q |
219 |
ttaaggataaattattttgttggtcctctaactatttaatt |
259 |
Q |
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| T |
45277050 |
ttaaggctaaattatctttttggtcctctaactatttaatt |
45277010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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