View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_37 (Length: 273)
Name: NF14969_low_37
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 39510898 - 39510645
Alignment:
| Q |
1 |
tatttcaaaaatataaaatcggttgtccagatgtatttgtagtaaattgtgctttattttcatcatgctatacaacaatttgcgtatgtgaggttttnnn |
100 |
Q |
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| T |
39510898 |
tatttcaaaaatataaaatcggttgtccaggtgtatttgtagtaaattgtgctttattttcatcatgctatacaacaatttgcgtatgtgaagttttaaa |
39510799 |
T |
|
| Q |
101 |
nnnnttaaaagaatgatatgataaatgatcatatatcattttttattttaacaaaagattatcatatatcatctccataacaccttaatttatctttaaa |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
39510798 |
aaa-ttaaaagaatgacatgataaatgatcatatatcattttttattttaacaaaagatgatcgtatatcatctccataacaccttaatttatctttaaa |
39510700 |
T |
|
| Q |
201 |
agtaaaaaaggaaattaatcannnnnnnagaaagaattaatcaatatatgaattat |
256 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39510699 |
agtaaaaaaggaaattaatca-ttttttagaaagaattaatcaatatatgaattat |
39510645 |
T |
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