View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_47 (Length: 251)
Name: NF14969_low_47
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 1551209 - 1551433
Alignment:
| Q |
11 |
ctcctctcttatgcatttatgtaaatagttaattcttatcnnnnnnnnncaatctcttaatctcactaatttacatataaaagaaataaaatcaaaatat |
110 |
Q |
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| T |
1551209 |
ctcctctcttatgcatttatgtaaatagttaattcttatctttttt---caatctcttaatctaactaatttacatataaaataaataaaatcaaaatat |
1551305 |
T |
|
| Q |
111 |
ttagtggaaacattgttattgatgttgatattttgaaaataatatactagttttcaaaatttaaccatgtcatttaatttctaaattgctatcaatattc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1551306 |
ttagtggaaacattgttattgatgttgatattttgaaactaatatactagttttcaaaatttaaccatgtcatttaatttctaaactgctatcaatattc |
1551405 |
T |
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| Q |
211 |
aataactcaattgaagtcttttttctct |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1551406 |
aataactcaattgaagtcttttttctct |
1551433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 92
Target Start/End: Complemental strand, 11854335 - 11854304
Alignment:
| Q |
61 |
aatctcttaatctcactaatttacatataaaa |
92 |
Q |
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| T |
11854335 |
aatctcttaatctcactaatttacatataaaa |
11854304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 25699265 - 25699327
Alignment:
| Q |
61 |
aatctcttaatctcactaatttacatataaaa-gaaataaaatcaaaatatttagtggaaaca |
122 |
Q |
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| T |
25699265 |
aatctattaatctcattaatttacatataaaataaaataaaataaaaatatttaatagaaaca |
25699327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 9373230 - 9373194
Alignment:
| Q |
61 |
aatctcttaatctcactaatttacatataaaagaaat |
97 |
Q |
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||||||||||||||||||||| |||||||||| |||| |
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| T |
9373230 |
aatctcttaatctcactaattcacatataaaaaaaat |
9373194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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