View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_52 (Length: 241)
Name: NF14969_low_52
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 8116504 - 8116605
Alignment:
| Q |
120 |
aaaggctacactcaattaataggtgtagtctttgacaaactaatattgatctattaattcgttagttatcattttctgtttttactgttacatgttccca |
219 |
Q |
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| T |
8116504 |
aaaggctacactcaattaataggtgtagtctttgacaaactaatattgatctattaattcgttagttatcattttctgtttttactgttacatgttccca |
8116603 |
T |
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| Q |
220 |
at |
221 |
Q |
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|| |
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| T |
8116604 |
at |
8116605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 8116388 - 8116443
Alignment:
| Q |
16 |
tgaaaagaatgttatagcatgtaggtgggtctataaaattaaatattaatttgttc |
71 |
Q |
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| T |
8116388 |
tgaaaagaatgttatagcatgtaggtgggtctataaaattaaatattaatttgttc |
8116443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 8106373 - 8106423
Alignment:
| Q |
171 |
tattaattcgttagttatcattttctgtttttactgttacatgttcccaat |
221 |
Q |
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| T |
8106373 |
tattaattagttagcaatcattttctgtttttactgttacttgttcccaat |
8106423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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