View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14969_low_57 (Length: 216)

Name: NF14969_low_57
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14969_low_57
NF14969_low_57
[»] chr8 (5 HSPs)
chr8 (94-201)||(1496799-1496910)
chr8 (19-87)||(25246778-25246845)
chr8 (19-85)||(41877677-41877742)
chr8 (19-53)||(10207460-10207494)
chr8 (37-89)||(36734762-36734813)
[»] chr7 (4 HSPs)
chr7 (19-92)||(47236152-47236224)
chr7 (19-86)||(28086057-28086122)
chr7 (38-68)||(19910346-19910376)
chr7 (19-53)||(27704743-27704777)
[»] chr1 (3 HSPs)
chr1 (19-89)||(7093783-7093852)
chr1 (19-89)||(15962562-15962631)
chr1 (19-91)||(44508049-44508120)
[»] chr2 (4 HSPs)
chr2 (19-85)||(43559916-43559981)
chr2 (19-68)||(33226504-33226553)
chr2 (21-89)||(21017025-21017092)
chr2 (20-89)||(45039881-45039949)
[»] chr3 (5 HSPs)
chr3 (24-89)||(39650671-39650735)
chr3 (19-68)||(49754395-49754444)
chr3 (19-89)||(29952700-29952768)
chr3 (19-89)||(30001854-30001922)
chr3 (19-68)||(26446177-26446226)
[»] chr4 (4 HSPs)
chr4 (19-68)||(20447619-20447668)
chr4 (19-68)||(47668758-47668807)
chr4 (19-82)||(35466668-35466730)
chr4 (20-69)||(46964209-46964258)
[»] chr5 (2 HSPs)
chr5 (20-68)||(33140158-33140206)
chr5 (19-66)||(35951780-35951827)
[»] chr6 (1 HSPs)
chr6 (19-87)||(20902977-20903044)
[»] scaffold0005 (1 HSPs)
scaffold0005 (38-89)||(270483-270533)
[»] scaffold0406 (1 HSPs)
scaffold0406 (23-89)||(12452-12516)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 1496910 - 1496799
Alignment:
Q  94 agtcactggtatcaacaatattcatattatggttatcttgataatggaca-gtatggagtat---atatggatgtacacacatgaaccaaccaacaattt 189  Q
    |||||| | |||||||  ||||| |||||||||||||||||||||||||| ||||||| |||   |||||||||||||||||||||||||||||||||||    
T  1496910 agtcacagatatcaaccgtattcgtattatggttatcttgataatggacaagtatggaatattatatatggatgtacacacatgaaccaaccaacaattt 1496811  T
Q  190 ccaaagaacaaa 201  Q
    ||||||||||||    
T  1496810 ccaaagaacaaa 1496799  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 25246845 - 25246778
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgc 87  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  25246845 tttttaaaatatattttatttcttctttatatttagccacctcgta-aaaattatgctagcttcgccgc 25246778  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 41877677 - 41877742
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgcc 85  Q
    ||||||||||||||||||||||||||||| ||||| || |||| | ||||||| |||||||||||||    
T  41877677 tttttaaaatatattttatttcttctttaaatttgacctcctcat-aaaaattgtgctagcttcgcc 41877742  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 10207494 - 10207460
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttg 53  Q
    |||| ||||||||||||||||||||||||||||||    
T  10207494 ttttaaaaatatattttatttcttctttatatttg 10207460  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 36734762 - 36734813
Alignment:
Q  37 tttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctg 89  Q
    |||||||||||||||| |||| ||||| ||||||  |||||||||||||||||    
T  36734762 tttcttctttatatttagccctctcgt-aaaaatagtgctagcttcgccgctg 36734813  T

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Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 47236152 - 47236224
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctggtt 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47236152 tttttaaaatatattttatttcttctttatatttggccccctcgt-aaaaattatgctagcttcgccgctggtt 47236224  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 28086122 - 28086057
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccg 86  Q
    |||||||||||||||||||||||||||||||||| | ||| |||| ||||||| ||| ||||||||||    
T  28086122 tttttaaaatatattttatttcttctttatattt-gacccttcgt-aaaaattgtgcgagcttcgccg 28086057  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 19910346 - 19910376
Alignment:
Q  38 ttcttctttatatttggccccctcgtaaaaa 68  Q
    |||||||||||||||||||||||||||||||    
T  19910346 ttcttctttatatttggccccctcgtaaaaa 19910376  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 27704777 - 27704743
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttg 53  Q
    |||||||||||||||||||||||| ||||||||||    
T  27704777 tttttaaaatatattttatttcttttttatatttg 27704743  T

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Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 7093783 - 7093852
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctg 89  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  7093783 tttttaaaatataatttatttcttctttatatttgaccccctcgt-aaaaattatgctagcttcgccgctg 7093852  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 15962562 - 15962631
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctg 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||||||    
T  15962562 tttttaaaatatattttatttcttctttatatttggccccctcgt-aaaaattgtgcgagctttgccgctg 15962631  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 44508120 - 44508049
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctggt 91  Q
    |||| |||||||||||||||||||||||||||||| ||| ||| | ||||||| || ||||||| ||||||||    
T  44508120 ttttaaaaatatattttatttcttctttatatttgacccgctcat-aaaaattgtgttagcttcaccgctggt 44508049  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 43559916 - 43559981
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgcc 85  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  43559916 tttttaaaatatattttatttcttctttatatttggctccctcgt-aaaaattgtgctagcttcgcc 43559981  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 33226553 - 33226504
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaa 68  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33226553 tttttaaaatatattttatttcttctttatatttggcctcctcgtaaaaa 33226504  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 21017092 - 21017025
Alignment:
Q  21 tttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctg 89  Q
    |||||||||||||||||||||||| ||| ||||||||||||||  |||||| || ||||||||||||||    
T  21017092 tttaaaatatattttatttcttctatatgtttggccccctcgt-taaaattgtgatagcttcgccgctg 21017025  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 45039949 - 45039881
Alignment:
Q  20 ttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctg 89  Q
    |||||||||||||||||||||||||||||||||  |||| ||  || ||||||| ||||||| |||||||    
T  45039949 ttttaaaatatattttatttcttctttatatttaaccccttc-aaacaaattatactagctttgccgctg 45039881  T

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Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 39650671 - 39650735
Alignment:
Q  24 aaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctg 89  Q
    |||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  39650671 aaaatatattttatttcttctttatatttgaccccctcat-aaaaattatgctagcttcgccgctg 39650735  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 49754395 - 49754444
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaa 68  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  49754395 tttttaaaatatattttatttcttctttatatttgaccccctcataaaaa 49754444  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 29952768 - 29952700
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctg 89  Q
    ||||||||||||||||||||||||||||||| || | | |||||| ||||||| ||| |||||||||||||    
T  29952768 tttttaaaatatattttatttcttctttatactt-gactcctcgt-aaaaattgtgcgagcttcgccgctg 29952700  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 30001922 - 30001854
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctg 89  Q
    ||||||||||||||||||||||||||||||| || | | |||||| ||||||| ||| |||||||||||||    
T  30001922 tttttaaaatatattttatttcttctttatactt-gactcctcgt-aaaaattgtgcgagcttcgccgctg 30001854  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 26446177 - 26446226
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaa 68  Q
    |||||||||||||||||||||||| |  |||||||| |||||||||||||    
T  26446177 tttttaaaatatattttatttcttttaaatatttggtcccctcgtaaaaa 26446226  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 20447668 - 20447619
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20447668 tttttaaaatatattttatttcttctttatatttggccccctcataaaaa 20447619  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 47668807 - 47668758
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaa 68  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  47668807 ttttcaaaatatattttatttcttctttatattttgccccctcgtaaaaa 47668758  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 35466668 - 35466730
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttc 82  Q
    |||||||||||||||||||||||| ||||||||||||| |  ||| ||||||| ||||||||||    
T  35466668 tttttaaaatatattttatttcttatttatatttggcctctacgt-aaaaattgtgctagcttc 35466730  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 46964209 - 46964258
Alignment:
Q  20 ttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaa 69  Q
    ||||||||| |||||||||| ||||| |||||| ||||||||||||||||    
T  46964209 ttttaaaatttattttattttttcttaatatttagccccctcgtaaaaaa 46964258  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 33140206 - 33140158
Alignment:
Q  20 ttttaaaatatattttatttcttctttatatttggccccctcgtaaaaa 68  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  33140206 ttttaaaatatatttgatttattcttcatatttggccccctcgtaaaaa 33140158  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 35951827 - 35951780
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaa 66  Q
    ||||||||||| |||||||||||| || |||||||||||| |||||||    
T  35951827 tttttaaaataaattttatttctttttaatatttggccccttcgtaaa 35951780  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 20902977 - 20903044
Alignment:
Q  19 tttttaaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgc 87  Q
    ||||||||||||||||||||| |||| | ||||||| ||||||||  ||||||||| ||||||| ||||    
T  20902977 tttttaaaatatattttattttttctatgtatttggtcccctcgt-gaaaattatgttagcttcaccgc 20903044  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 270483 - 270533
Alignment:
Q  38 ttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctg 89  Q
    |||||||||||||||||||||||||| ||||||  || ||||||||||||||    
T  270483 ttcttctttatatttggccccctcgt-aaaaatagtgttagcttcgccgctg 270533  T

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Target: scaffold0406 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 12516 - 12452
Alignment:
Q  23 taaaatatattttatttcttctttatatttggccccctcgtaaaaaattatgctagcttcgccgctg 89  Q
    |||||||| ||||||||||| |||||| |||||||||| |||||| ||| | |||||||||||||||    
T  12516 taaaatattttttatttcttttttata-ttggcccccttgtaaaatatt-tactagcttcgccgctg 12452  T

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