View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_low_9 (Length: 446)
Name: NF14969_low_9
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 429
Target Start/End: Original strand, 279584 - 280017
Alignment:
| Q |
14 |
aagcaaaggtgcaagtgaatacaacaggtcatattctttatttatttattaatggattttttacgggtacacaacatggt------------------tt |
95 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
279584 |
aagcaaaggtgcaagtgaatacaacaggtcatattctttatttatttattaatggatttttgacgggtacacaacatggtaccgttagtcaacctggttt |
279683 |
T |
|
| Q |
96 |
tatacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
279684 |
tatacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagtaggtcatgcaaattacggtgcgttctttgatatg |
279783 |
T |
|
| Q |
196 |
caagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279784 |
caagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttg |
279883 |
T |
|
| Q |
296 |
ggataaatggtatgactaaaaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggta |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279884 |
ggataaatggtatgactaaaaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggta |
279983 |
T |
|
| Q |
396 |
taagactactttcaagacccctgatggtacaaac |
429 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
279984 |
taagactactttcaagacccctgatggtacaaac |
280017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 115 - 429
Target Start/End: Original strand, 290148 - 290462
Alignment:
| Q |
115 |
tctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttg |
214 |
Q |
| |
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||||| || |||||| |||||||||||||||| |||||||||||| |||| | |||||| ||| || | |||||||| |||||||||| ||||||| |
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| T |
290148 |
tctttgaaacaaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaagaaactggtattgttg |
290247 |
T |
|
| Q |
215 |
ggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaa |
314 |
Q |
| |
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| T |
290248 |
gcggtcctgcgaaactcatttcaactgaatatccaaacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtgtggctag |
290347 |
T |
|
| Q |
315 |
aaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacc |
414 |
Q |
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||||||||||||||||||| | |||| || ||||| |||| ||||| |||||||||||||| || ||||||||||||||| ||||| |||||||||||| |
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| T |
290348 |
aaagttctatgatcccaaatctaccaatgtagttccatggcaaacacgtaatgtttctatagaaggaccaatgacttggtacaagaccactttcaagacc |
290447 |
T |
|
| Q |
415 |
cctgatggtacaaac |
429 |
Q |
| |
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||||| ||| ||||| |
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| T |
290448 |
cctgaaggttcaaac |
290462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 126 - 419
Target Start/End: Original strand, 24531886 - 24532176
Alignment:
| Q |
126 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttgggggtcctgta |
225 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||||| ||| |
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| T |
24531886 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttgggggtcatgtt |
24531985 |
T |
|
| Q |
226 |
aaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctatg |
325 |
Q |
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|||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||| |
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| T |
24531986 |
aaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtatggctagaaagttctatg |
24532085 |
T |
|
| Q |
326 |
atcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctga |
419 |
Q |
| |
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|||||||| | | |||||||| ||||| | || ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
24532086 |
atcccaaa---tctaatggagttccatggataccacgtaatgtttctataggagtaccaatgacttggtacaagaccactttcaagacccctga |
24532176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 126 - 417
Target Start/End: Original strand, 24525213 - 24525502
Alignment:
| Q |
126 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttggggg-tcctgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||| || ||| |
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| T |
24525213 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttggggggtcatgt |
24525312 |
T |
|
| Q |
225 |
aaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctat |
324 |
Q |
| |
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|||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |
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| T |
24525313 |
gaaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggatgaatggtatggctagaaagttctaa |
24525412 |
T |
|
| Q |
325 |
gatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccct |
417 |
Q |
| |
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||||||| | | | |||||||| ||||| | || ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
24525413 |
gatcccaga---tctaatggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccct |
24525502 |
T |
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