View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1496_high_3 (Length: 496)

Name: NF1496_high_3
Description: NF1496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1496_high_3
NF1496_high_3
[»] chr2 (8 HSPs)
chr2 (45-487)||(32965599-32966035)
chr2 (300-372)||(31719185-31719256)
chr2 (336-377)||(1220818-1220859)
chr2 (301-373)||(30429074-30429145)
chr2 (302-366)||(32516205-32516268)
chr2 (301-366)||(11021127-11021191)
chr2 (302-366)||(5746826-5746889)
chr2 (288-356)||(9733547-9733614)
[»] chr8 (8 HSPs)
chr8 (290-365)||(12354445-12354519)
chr8 (237-286)||(26583679-26583728)
chr8 (291-335)||(1784190-1784234)
chr8 (300-356)||(27988083-27988138)
chr8 (300-356)||(28045385-28045440)
chr8 (336-370)||(30114809-30114843)
chr8 (291-356)||(18147806-18147870)
chr8 (303-367)||(9503612-9503675)
[»] chr7 (18 HSPs)
chr7 (287-374)||(29229735-29229820)
chr7 (301-374)||(12423708-12423780)
chr7 (302-370)||(42926991-42927058)
chr7 (303-370)||(35985267-35985333)
chr7 (303-370)||(36006675-36006741)
chr7 (302-369)||(39751071-39751137)
chr7 (301-371)||(29229678-29229747)
chr7 (284-374)||(35274475-35274564)
chr7 (307-356)||(31498502-31498550)
chr7 (300-360)||(34465130-34465189)
chr7 (303-370)||(3094402-3094468)
chr7 (305-371)||(35985325-35985391)
chr7 (305-371)||(36006733-36006799)
chr7 (302-372)||(48634182-48634252)
chr7 (309-374)||(30481358-30481423)
chr7 (300-373)||(34427570-34427642)
chr7 (302-358)||(3485901-3485956)
chr7 (301-357)||(39962049-39962103)
[»] chr6 (5 HSPs)
chr6 (301-366)||(674121-674185)
chr6 (291-375)||(3846426-3846509)
chr6 (303-374)||(2271188-2271258)
chr6 (303-356)||(5069947-5069999)
chr6 (302-335)||(10355899-10355932)
[»] chr5 (15 HSPs)
chr5 (303-372)||(24404806-24404874)
chr5 (303-374)||(8850326-8850396)
chr5 (300-359)||(18550981-18551039)
chr5 (301-356)||(28351025-28351079)
chr5 (301-360)||(34445338-34445396)
chr5 (302-356)||(7065666-7065719)
chr5 (290-356)||(16829197-16829261)
chr5 (300-369)||(19087845-19087913)
chr5 (303-360)||(25840579-25840636)
chr5 (301-356)||(28499787-28499841)
chr5 (290-360)||(22398122-22398191)
chr5 (294-372)||(30920059-30920136)
chr5 (302-359)||(37514239-37514295)
chr5 (301-377)||(12645408-12645483)
chr5 (300-360)||(13391535-13391594)
[»] chr4 (7 HSPs)
chr4 (301-358)||(39993121-39993177)
chr4 (307-366)||(47493212-47493270)
chr4 (291-366)||(38562121-38562195)
chr4 (307-356)||(20291863-20291911)
chr4 (301-366)||(32125409-32125473)
chr4 (303-356)||(33508613-33508665)
chr4 (307-360)||(53225725-53225777)
[»] chr3 (13 HSPs)
chr3 (301-366)||(32833498-32833562)
chr3 (301-352)||(30121956-30122006)
chr3 (300-374)||(26331222-26331295)
chr3 (300-366)||(31836482-31836547)
chr3 (301-374)||(26331280-26331351)
chr3 (290-358)||(28732452-28732520)
chr3 (305-373)||(26601972-26602039)
chr3 (301-360)||(55121179-55121237)
chr3 (291-353)||(16867613-16867674)
chr3 (302-360)||(55121251-55121308)
chr3 (301-366)||(9502877-9502941)
chr3 (291-356)||(29290777-29290841)
chr3 (303-367)||(27786526-27786589)
[»] chr1 (19 HSPs)
chr1 (291-360)||(21945053-21945121)
chr1 (301-373)||(47154713-47154784)
chr1 (301-360)||(38636279-38636337)
chr1 (301-374)||(457635-457707)
chr1 (301-358)||(882931-882987)
chr1 (291-360)||(4604915-4604983)
chr1 (303-356)||(11016670-11016722)
chr1 (301-374)||(30412602-30412674)
chr1 (289-366)||(30692766-30692842)
chr1 (301-366)||(31032513-31032577)
chr1 (291-356)||(49166689-49166753)
chr1 (303-366)||(1609971-1610033)
chr1 (301-356)||(24419538-24419592)
chr1 (303-368)||(50403096-50403161)
chr1 (301-374)||(47911855-47911927)
chr1 (302-355)||(51171338-51171390)
chr1 (301-377)||(4540680-4540755)
chr1 (300-336)||(17342447-17342483)
chr1 (302-346)||(38636235-38636278)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 45 - 487
Target Start/End: Complemental strand, 32966035 - 32965599
Alignment:
Q  45 cctaggtcatgaaagaatgagacaaattaacaagttaaccatcattgttttgtaattttgtcataccacagaagtctaccatccaaattggtgatgatac 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32966035 cctaggtcatgaaagaatgagacaaattaacaagttaaccatcattgttttgtaattttgtcataccacagaagtctaccatccaaattggtgatgatac 32965936  T
Q  145 aagttaacaagagacggtaaaccacaaaaacataataataagttcatgtttggtaccatggtgagtttgacagaatcacagcaaaatcactatat--gtc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||||  |||    
T  32965935 aagttaacaagagacggtaaaccacaaaaacataataataagttcatgtttggtatcatggtgagtttgacag--------caaaatcactatatatgtc 32965844  T
Q  243 tcaccgtgatttcgataaactcaccatgataacaaacatgtactaaagtacttcctttggtcacatttataagtaaaaatcaactttttagatttcattg 342  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  32965843 tcaccgtgatttcgataaactcaccatgataccaaacatgtactatagtactccctttagtcacatttataagtaaaaaccaactttttagatttcattg 32965744  T
Q  343 aataactaatgtatttggcctatatatagaccgaaaacaatagatgtgactcaagggagtaaacagtaagccgtggtaaagaaagtgacagctggtcagt 442  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||    
T  32965743 aataactaatgtatttggcctatatatagaccggatacaatagatgtgactagagggagtaaaccgtaagccgtggtaaagaaagtgacagctggtcagt 32965644  T
Q  443 tctaggataagccttcactttgaacataattaagcatagtataat 487  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  32965643 tctaggataagccttcactttgaatataattaagcatagtataat 32965599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 31719185 - 31719256
Alignment:
Q  300 tggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatataga 372  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  31719185 tggtcacatttataagtaaaaaacaactttttaga-ttcattgaataacaaatgtatttggactatatataga 31719256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 1220818 - 1220859
Alignment:
Q  336 ttcattgaataactaatgtatttggcctatatatagaccgaa 377  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  1220818 ttcattgaataactaatgtatttgacctatatatagaccgaa 1220859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 30429074 - 30429145
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagac 373  Q
    ||||||||||||||| ||||| |||||||||||  |||||| ||||| |||||||| || ||| |||||||||    
T  30429074 ggtcacatttataagcaaaaaacaactttttag-gttcattcaataattaatgtatctgacctttatatagac 30429145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 32516268 - 32516205
Alignment:
Q  302 gtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    |||||||||||||||||||  ||| |||||| ||| |||||||||| |||||||||||| |||||    
T  32516268 gtcacatttataagtaaaacacaattttttaaatt-cattgaataattaatgtatttggtctata 32516205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 11021191 - 11021127
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    |||||||||||||||  |||| ||||||||||  |||||||| ||||||||||||| || ||||||    
T  11021191 ggtcacatttataagggaaaaacaactttttat-tttcattggataactaatgtatctgacctata 11021127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 5746889 - 5746826
Alignment:
Q  302 gtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    ||||||||||||| ||||||| || |||||||| |||||| ||||  |||||||||||| |||||    
T  5746889 gtcacatttataaataaaaattaattttttaga-ttcattaaatacgtaatgtatttggtctata 5746826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 9733614 - 9733547
Alignment:
Q  288 aagtacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    ||||||| |||  ||||||||||||||  ||||| ||| ||||||| || |||||||||||||||||||    
T  9733614 aagtactccctccggtcacatttataaacaaaaaacaattttttaggtt-cattgaataactaatgtat 9733547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 12354445 - 12354519
Alignment:
Q  290 gtacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctat 365  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||  |||||||||  ||||||||||||| ||||    
T  12354445 gtactcccttcggtcacatttataagcaaaaatcaactttttaga-ctcattgaatgtctaatgtatttggtctat 12354519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 26583679 - 26583728
Alignment:
Q  237 tatgtctcaccgtgatttcgataaactcaccatgataacaaacatgtact 286  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  26583679 tatgtctcaccgtgattttgataaactcaccgtgataccaaacatgtact 26583728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 1784234 - 1784190
Alignment:
Q  291 tacttcctttggtcacatttataagtaaaaatcaactttttagat 335  Q
    |||||||| |||||||||||||||| ||||| |||||||||||||    
T  1784234 tacttcctctggtcacatttataagcaaaaaacaactttttagat 1784190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 27988083 - 27988138
Alignment:
Q  300 tggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||| ||||||||    
T  27988083 tggtcacatttataagcaaaaaacaacttttta-agttcattgaataagtaatgtat 27988138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 28045385 - 28045440
Alignment:
Q  300 tggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||| ||||||||    
T  28045385 tggtcacatttataagcaaaaaacaacttttta-agttcattgaataagtaatgtat 28045440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 30114843 - 30114809
Alignment:
Q  336 ttcattgaataactaatgtatttggcctatatata 370  Q
    ||||||||||||||||||||||||| |||||||||    
T  30114843 ttcattgaataactaatgtatttggtctatatata 30114809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 18147806 - 18147870
Alignment:
Q  291 tacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    ||||||||| | ||||||||||| | |||||  |||||||||| || |||||||||||||||||||    
T  18147806 tacttccttcgatcacatttatatgcaaaaaaaaactttttaggtt-cattgaataactaatgtat 18147870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 9503675 - 9503612
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatat 367  Q
    ||||||||||||  |||||  ||||||||||||| |||||||||  |||||||||||| ||||||    
T  9503675 tcacatttataaacaaaaaataactttttagatt-cattgaatatttaatgtatttggtctatat 9503612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 374
Target Start/End: Complemental strand, 29229820 - 29229735
Alignment:
Q  287 aaagtacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagacc 374  Q
    |||||||| |||  ||||| ||||||||| ||||| ||||||||||| || ||||||||||||||||||| || ||||||||||||||    
T  29229820 aaagtactccctccggtcatatttataagcaaaaa-caactttttaggtt-cattgaataactaatgtatctgacctatatatagacc 29229735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 12423780 - 12423708
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagacc 374  Q
    ||||||||||||||| ||||||  ||||||||| || |||||||||  ||||||||||| ||||||||||||||    
T  12423780 ggtcacatttataagcaaaaatgtactttttaggtt-cattgaatacataatgtatttgacctatatatagacc 12423708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 42926991 - 42927058
Alignment:
Q  302 gtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatata 370  Q
    |||| ||||||||  |||||||||||| ||||||| ||||||||||||||||||||||  |||||||||    
T  42926991 gtcatatttataaacaaaaatcaacttcttagatt-cattgaataactaatgtatttgatctatatata 42927058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 370
Target Start/End: Original strand, 35985267 - 35985333
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatata 370  Q
    ||||||||||||| ||||  ||||||||||||||  |||||||||||||||||| || ||||||||||    
T  35985267 tcacatttataagcaaaatacaactttttagatta-attgaataactaatgtatatgacctatatata 35985333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 370
Target Start/End: Original strand, 36006675 - 36006741
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatata 370  Q
    ||||||||||||| ||||  ||||||||||||||  |||||||||||||||||| || ||||||||||    
T  36006675 tcacatttataagcaaaatacaactttttagatta-attgaataactaatgtatatgacctatatata 36006741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 369
Target Start/End: Original strand, 39751071 - 39751137
Alignment:
Q  302 gtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatat 369  Q
    |||| ||||||||||||||| |||||||||||| |||||| |||| ||||||||| ||| ||||||||    
T  39751071 gtcatatttataagtaaaaaacaactttttaga-ttcattaaatatctaatgtatatggtctatatat 39751137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 29229678 - 29229747
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatag 371  Q
    |||||||| |||||| ||||| |||||||||||| |||||| || |||||||| |||||| ||||||||||    
T  29229678 ggtcacatatataagcaaaaaacaactttttaga-ttcattaaacaactaatgcatttggtctatatatag 29229747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 374
Target Start/End: Complemental strand, 35274564 - 35274475
Alignment:
Q  284 actaaagtacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagacc 374  Q
    |||||| |||| |||  ||||||||||||||| ||||||  ||||||||| || |||||||||  |||||||||||| |||||||| ||||    
T  35274564 actaaaatactccctccggtcacatttataagcaaaaatgcactttttaggtt-cattgaatacataatgtatttggtctatatattgacc 35274475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 31498502 - 31498550
Alignment:
Q  307 atttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||||||    
T  31498502 atttataagtaaaaatcaaatttttagattt-attaaataactaatgtat 31498550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 34465130 - 34465189
Alignment:
Q  300 tggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttgg 360  Q
    |||||||||||||||  |||||||||||||||||  ||||||  |||||||||||||||||    
T  34465130 tggtcacatttataaacaaaaatcaactttttag-gttcattatataactaatgtatttgg 34465189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 3094468 - 3094402
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatata 370  Q
    |||||||||||||||||||  ||||||| || || ||||||||||||||||||  ||| |||||||||    
T  3094468 tcacatttataagtaaaaaataacttttaaggtt-cattgaataactaatgtacctggtctatatata 3094402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 35985391 - 35985325
Alignment:
Q  305 acatttataagtaaa-aatcaactttttagatttcattgaataactaatgtatttggcctatatatag 371  Q
    ||||||||||| ||| || ||||||||||||||  ||||||||||||||||||||| | |||||||||    
T  35985391 acatttataagaaaagaaacaactttttagatta-attgaataactaatgtatttgacttatatatag 35985325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 36006799 - 36006733
Alignment:
Q  305 acatttataagtaaa-aatcaactttttagatttcattgaataactaatgtatttggcctatatatag 371  Q
    ||||||||||| ||| || ||||||||||||||  ||||||||||||||||||||| | |||||||||    
T  36006799 acatttataagaaaagaaacaactttttagatta-attgaataactaatgtatttgacttatatatag 36006733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 372
Target Start/End: Original strand, 48634182 - 48634252
Alignment:
Q  302 gtcacatttataagtaaaaatca-actttttagatttcattgaataactaatgtatttggcctatatataga 372  Q
    ||||||||||||| ||||||  | |||||||||||| |||||||||  |||||||||||| |||||||||||    
T  48634182 gtcacatttataaataaaaaaaatactttttagatt-cattgaatacataatgtatttggtctatatataga 48634252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 30481423 - 30481358
Alignment:
Q  309 ttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagacc 374  Q
    ||||||| |||||| ||||||||    ||||||||   ||||||||||||||||||||||||||||    
T  30481423 ttataagcaaaaattaactttttcatattcattgagagactaatgtatttggcctatatatagacc 30481358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 34427642 - 34427570
Alignment:
Q  300 tggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagac 373  Q
    |||||||||||||||| |||||  || |||||| | |||||| |||||||||| ||| || |||||||||||||    
T  34427642 tggtcacatttataagcaaaaagtaatttttta-agttcattcaataactaatatatctgacctatatatagac 34427570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 3485956 - 3485901
Alignment:
Q  302 gtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtattt 358  Q
    |||||||||||||| ||||  ||| |||||||||| ||||||||| |||||||||||    
T  3485956 gtcacatttataagcaaaacacaattttttagatt-cattgaatatctaatgtattt 3485901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 39962049 - 39962103
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatt 357  Q
    |||||||||||||||||||||  ||| |||||||||| |||||| ||||||||||||    
T  39962049 ggtcacatttataagtaaaaaataaccttttagattt-attgaa-aactaatgtatt 39962103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 674185 - 674121
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    ||||||||||||||| ||||| ||| |||||||| ||||||||||||||||| ||||||| |||||    
T  674185 ggtcacatttataagcaaaaaacaattttttaga-ttcattgaataactaatatatttggtctata 674121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 3846426 - 3846509
Alignment:
Q  291 tacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagaccg 375  Q
    |||| |||| ||||||||||||||| |||||  || |||||| | |||||||||||| |||||||| || |||||||||||||||    
T  3846426 tactcccttcggtcacatttataagcaaaaaataatttttta-agttcattgaataaataatgtatatgacctatatatagaccg 3846509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 2271258 - 2271188
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagacc 374  Q
    ||||||||||||| |||||  ||||||||||||| ||||||| |||||||||||||| | ||||||| ||||    
T  2271258 tcacatttataagcaaaaaataactttttagatt-cattgaacaactaatgtatttgacatatatattgacc 2271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 5069947 - 5069999
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    ||||||||||||| ||||| |||||||||||| | |||||||||| ||||||||    
T  5069947 tcacatttataagcaaaaaacaactttttaga-tacattgaataattaatgtat 5069999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 10355899 - 10355932
Alignment:
Q  302 gtcacatttataagtaaaaatcaactttttagat 335  Q
    |||||||||||||| |||||||||||||||||||    
T  10355899 gtcacatttataagcaaaaatcaactttttagat 10355932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 372
Target Start/End: Original strand, 24404806 - 24404874
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatataga 372  Q
    ||||||||| ||||||||| ||||||||| ||||| ||||||||||||| |||| || ||||||||||||    
T  24404806 tcacatttacaagtaaaaaacaactttttcgattt-attgaataactaacgtatctgacctatatataga 24404874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 8850396 - 8850326
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagacc 374  Q
    ||||||||||||||||||||  ||||||||| || |||||||||  |||||||||||| |||||||| ||||    
T  8850396 tcacatttataagtaaaaatgtactttttaggtt-cattgaatacataatgtatttggtctatatattgacc 8850326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 18550981 - 18551039
Alignment:
Q  300 tggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttg 359  Q
    |||||||||||||||| ||||  ||||| |||||||| ||||||||||||||||||||||    
T  18550981 tggtcacatttataagcaaaacacaactgtttagatt-cattgaataactaatgtatttg 18551039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 28351079 - 28351025
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    ||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  28351079 ggtcatatttataagcaaaaaacaactttttaga-ttcattgaataactaatgtat 28351025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 34445396 - 34445338
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttgg 360  Q
    ||||||||||||||| |||   ||||||||||||||| ||||||||||||||||||||||    
T  34445396 ggtcacatttataagcaaatcacaactttttagattt-attgaataactaatgtatttgg 34445338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 7065719 - 7065666
Alignment:
Q  302 gtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    |||||||||||||| |||||||||||||||| | |||||||||||| ||||||||    
T  7065719 gtcacatttataagcaaaaatcaacttttta-aattcattgaataattaatgtat 7065666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 16829197 - 16829261
Alignment:
Q  290 gtacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    ||||||||| |||||||||||||||| |||||| ||||||||| | ||||||||||| |||||||||    
T  16829197 gtacttcctctggtcacatttataagcaaaaat-aacttttta-agttcattgaatatctaatgtat 16829261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 19087913 - 19087845
Alignment:
Q  300 tggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatat 369  Q
    |||||||||||||||| ||||||  ||||||||| || |||||||||  |||||||||||| ||||||||    
T  19087913 tggtcacatttataagcaaaaatgtactttttaggtt-cattgaatacataatgtatttggtctatatat 19087845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 25840579 - 25840636
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttgg 360  Q
    ||||||||||||||||||| ||| |||||  | |||||||||||| ||||||||||||    
T  25840579 tcacatttataagtaaaaaacaatttttttaaattcattgaataagtaatgtatttgg 25840636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 28499787 - 28499841
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    ||||||||||||||| |||||  || |||||||||| |||||||||||||||||||    
T  28499787 ggtcacatttataagcaaaaaataattttttagatt-cattgaataactaatgtat 28499841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 22398191 - 22398122
Alignment:
Q  290 gtacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttgg 360  Q
    ||||||| || | ||| |||||||| |||||  |||||||||||||| |||||||||| ||||||||||||    
T  22398191 gtacttctttcgatcatatttataaataaaatacaactttttagatt-cattgaataattaatgtatttgg 22398122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 30920136 - 30920059
Alignment:
Q  294 ttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatataga 372  Q
    ||||| || ||| ||||||||||||||||   ||||||||||| |||| |||| ||||||||||||| ||| |||||||    
T  30920136 ttcctctgatcatatttataagtaaaaatgtcctttttagatt-cattaaatacctaatgtatttggtctacatataga 30920059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 359
Target Start/End: Complemental strand, 37514295 - 37514239
Alignment:
Q  302 gtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttg 359  Q
    |||||| ||||| | |||||| ||||||| ||||| ||||||||||||||||||||||    
T  37514295 gtcacaattatatgcaaaaattaacttttcagatt-cattgaataactaatgtatttg 37514239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 12645483 - 12645408
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagaccgaa 377  Q
    |||||||| |||||| |||||   |||||||| | |||||||||||  |||||||||||| ||||||||| ||||||    
T  12645483 ggtcacatatataagcaaaaaaatacttttta-agttcattgaatacataatgtatttggtctatatataaaccgaa 12645408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 13391535 - 13391594
Alignment:
Q  300 tggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttgg 360  Q
    |||||||  |||||||||||| ||||||||||||| |||||| ||||| | ||||||||||    
T  13391535 tggtcactattataagtaaaagtcaactttttaga-ttcattcaataaatgatgtatttgg 13391594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 39993177 - 39993121
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtattt 358  Q
    |||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||    
T  39993177 ggtcacatttataagtaaaaaataactttttaga-ttcattgaataattaatgtattt 39993121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 47493212 - 47493270
Alignment:
Q  307 atttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    ||||||||||||||| | ||||||||||||| |||||||| ||||||||||||| |||||    
T  47493212 atttataagtaaaaaactactttttagattt-attgaatacctaatgtatttggtctata 47493270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 38562121 - 38562195
Alignment:
Q  291 tacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    |||| |||| ||||||||||||||| ||||| |||||| ||||| | |||||||||| |||||||| || ||||||    
T  38562121 tactcccttcggtcacatttataagcaaaaaacaacttgttaga-tacattgaataattaatgtatatgtcctata 38562195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 20291911 - 20291863
Alignment:
Q  307 atttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    ||||||||| |||||  |||||||||||||| ||||||||||||||||||    
T  20291911 atttataagcaaaaaataactttttagattt-attgaataactaatgtat 20291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 32125473 - 32125409
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    ||||| ||||||||| ||||||| ||||||||| || ||||||||| ||||||||| ||| |||||    
T  32125473 ggtcatatttataagcaaaaatctactttttaggtt-cattgaatatctaatgtatgtggtctata 32125409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 33508665 - 33508613
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    ||||||||||||| ||||  |||||| ||||||| |||||||||||||||||||    
T  33508665 tcacatttataagcaaaacacaacttgttagatt-cattgaataactaatgtat 33508613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 53225777 - 53225725
Alignment:
Q  307 atttataagtaaaaatcaactttttagatttcattgaataactaatgtatttgg 360  Q
    ||||||||| ||||||  |||||||||||| |||||||||| ||||||||||||    
T  53225777 atttataagaaaaaattgactttttagatt-cattgaataattaatgtatttgg 53225725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 32833498 - 32833562
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    |||||||||||||| ||||| |||||| |||| |||| |||||||||||||||||||||| |||||    
T  32833498 ggtcacatttataaataaaactcaactatttaaattt-attgaataactaatgtatttggtctata 32833562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 30121956 - 30122006
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaat 352  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  30121956 ggtcacatttataagtaaaaatcaattttttag-gttcattgaataactaat 30122006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 26331222 - 26331295
Alignment:
Q  300 tggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagacc 374  Q
    |||||||||||||||| ||||| ||| ||| ||| || |||||||| |||||||||| ||| |||||||||||||    
T  26331222 tggtcacatttataagcaaaaaacaattttctaggtt-cattgaatgactaatgtatctggtctatatatagacc 26331295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 31836547 - 31836482
Alignment:
Q  300 tggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    ||||||||||||||||||||   ||||||||||| || |||||||||| |||||||||||| |||||    
T  31836547 tggtcacatttataagtaaatgacaactttttaggtt-cattgaataattaatgtatttggtctata 31836482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 26331351 - 26331280
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagacc 374  Q
    ||||||||||||||| ||||| |||||||||||  |||||||||  |||||||| ||||| |||||||||||||    
T  26331351 ggtcacatttataagcaaaaaacaactttttag-gttcattgaaagactaatgt-tttggtctatatatagacc 26331280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 28732452 - 28732520
Alignment:
Q  290 gtacttcctttggtcacatttataagtaaaaa-tcaactttttagatttcattgaataactaatgtattt 358  Q
    ||||| ||| |||||||||||||||||||||| | ||| ||||||  |||||||||||||||||||||||    
T  28732452 gtactccctctggtcacatttataagtaaaaacttaacattttag-gttcattgaataactaatgtattt 28732520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 26601972 - 26602039
Alignment:
Q  305 acatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagac 373  Q
    ||||||||||| ||||| ||||||||||| || |||||||||| ||| |||| | ||||||||||||||    
T  26601972 acatttataagcaaaaaacaactttttaggtt-cattgaataattaacgtatctagcctatatatagac 26602039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 55121179 - 55121237
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttgg 360  Q
    ||||||||||||||  ||||| ||| ||||||| || |||||||||||||||||||||||    
T  55121179 ggtcacatttataaacaaaaaacaattttttaggtt-cattgaataactaatgtatttgg 55121237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 16867613 - 16867674
Alignment:
Q  291 tacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatg 353  Q
    |||| ||| |||||||||||||||| ||||| |||||||||||  | ||||||||||||||||    
T  16867613 tactccctctggtcacatttataagcaaaaaacaactttttag-gtacattgaataactaatg 16867674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 55121308 - 55121251
Alignment:
Q  302 gtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttgg 360  Q
    |||||||||||||| |||||  |||||||||||||| ||| ||||| ||||||||||||    
T  55121308 gtcacatttataagcaaaaaataactttttagattt-attaaataattaatgtatttgg 55121251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 9502877 - 9502941
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    |||||||||||||||||||||   |||||||||| |||||| || | ||||||||||||| |||||    
T  9502877 ggtcacatttataagtaaaaaatcactttttaga-ttcattcaacacctaatgtatttggtctata 9502941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 29290777 - 29290841
Alignment:
Q  291 tacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    |||||||||||||| | |||||||| ||||||  |||||||||| ||||||||| |||| ||||||    
T  29290777 tacttcctttggtcccttttataagaaaaaattcactttttaga-ttcattgaacaactgatgtat 29290841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 27786589 - 27786526
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatat 367  Q
    ||||||||||||| ||||  ||||||||||| || ||||||||| ||||| ||||||| ||||||    
T  27786589 tcacatttataagcaaaacacaactttttaggtt-cattgaatacctaatatatttggtctatat 27786526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 21945053 - 21945121
Alignment:
Q  291 tacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttgg 360  Q
    |||| |||||| |||||||||||||||||||   |||||||||| ||||||||||| |||||||||||||    
T  21945053 tactccctttgatcacatttataagtaaaaaatcactttttaga-ttcattgaatacctaatgtatttgg 21945121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 47154784 - 47154713
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagac 373  Q
    ||||||||| ||||| ||||| ||||||||||| || |||| ||||| |||||||| ||||||||||||||||    
T  47154784 ggtcacattaataagcaaaaaacaactttttaggtt-catttaataaataatgtatctggcctatatatagac 47154713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 38636337 - 38636279
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttgg 360  Q
    ||||||||||| ||| ||||| |||||||||||| || ||||||||||||||||||||||    
T  38636337 ggtcacatttaaaagcaaaaaacaactttttaga-ttgattgaataactaatgtatttgg 38636279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 457707 - 457635
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagacc 374  Q
    ||||||||||||||| ||||||  ||||||||| || |||||||||  |||||||||||| |||||||| ||||    
T  457707 ggtcacatttataagcaaaaatgcactttttaggtt-cattgaatacataatgtatttggtctatatattgacc 457635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 882931 - 882987
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtattt 358  Q
    ||||||||||||||||||||   |||||||||| || |||||||||||||||||||||    
T  882931 ggtcacatttataagtaaaatataactttttaggtt-cattgaataactaatgtattt 882987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 4604983 - 4604915
Alignment:
Q  291 tacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttgg 360  Q
    ||||||||| ||||||||||||||| |||||   ||||||||| ||| |||||||| |||||||||||||    
T  4604983 tacttccttcggtcacatttataagcaaaaaatcactttttaggttt-attgaatacctaatgtatttgg 4604915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 11016722 - 11016670
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    ||||||||||||  ||||||||||||||||| ||| ||||||||||||||||||    
T  11016722 tcacatttataaacaaaaatcaactttttaggttt-attgaataactaatgtat 11016670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 374
Target Start/End: Original strand, 30412602 - 30412674
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagacc 374  Q
    ||||||||||||||| ||||||  ||||||||| || |||||||||  |||||||||||| |||||||| ||||    
T  30412602 ggtcacatttataagcaaaaatgcactttttaggtt-cattgaatacataatgtatttggtctatatattgacc 30412674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 366
Target Start/End: Original strand, 30692766 - 30692842
Alignment:
Q  289 agtacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    |||||||||| | |||||||||||||| ||||  ||||||||||| |||  ||||||| ||||||||||||| |||||    
T  30692766 agtacttcctctagtcacatttataagaaaaacacaactttttaggttt-gttgaatatctaatgtatttggtctata 30692842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 31032577 - 31032513
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    ||||||||||||||| |||| |||| ||||||| || |||| |||||||||||||||||| |||||    
T  31032577 ggtcacatttataagcaaaactcaattttttaggtt-cattaaataactaatgtatttggtctata 31032513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 49166753 - 49166689
Alignment:
Q  291 tacttcctttggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    |||| ||| |||||||||||||||| ||||| ||||||||||| || |||||||||| ||||||||    
T  49166753 tactccctctggtcacatttataagcaaaaaacaactttttag-ttacattgaataattaatgtat 49166689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 1609971 - 1610033
Alignment:
Q  303 tcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctata 366  Q
    ||||||||||||| ||||| |||||||||||| | |||||||||| |||||||| || ||||||    
T  1609971 tcacatttataagcaaaaaacaactttttaga-tacattgaataattaatgtatctgacctata 1610033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 24419538 - 24419592
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtat 356  Q
    ||||||||||||||| |||||  ||||||||||| ||||||||| |||||||||||    
T  24419538 ggtcacatttataagcaaaaaagaactttttaga-ttcattgaagaactaatgtat 24419592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 50403096 - 50403161
Alignment:
Q  303 tcacatttataagtaaaaat-caactttttagatttcattgaataactaatgtatttggcctatata 368  Q
    ||||||||||||| |||||  |||||||||| |||| |||||||||||||||||| ||| |||||||    
T  50403096 tcacatttataagcaaaaacacaactttttaaattt-attgaataactaatgtatctggtctatata 50403161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 374
Target Start/End: Original strand, 47911855 - 47911927
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagacc 374  Q
    ||||||||||||||  ||||||  ||||||||| || |||||||||  |||||||||||| |||||||| ||||    
T  47911855 ggtcacatttataaacaaaaatgcactttttaggtt-cattgaatacataatgtatttggtctatatattgacc 47911927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 51171390 - 51171338
Alignment:
Q  302 gtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgta 355  Q
    ||||||||||||||||||||  ||||||||| | |||||| |||||||||||||    
T  51171390 gtcacatttataagtaaaaaataacttttta-agttcattaaataactaatgta 51171338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 4540755 - 4540680
Alignment:
Q  301 ggtcacatttataagtaaaaatcaactttttagatttcattgaataactaatgtatttggcctatatatagaccgaa 377  Q
    ||||||||||||||| |||||   | |||||||||| |||| ||||  |||||||||||| | ||||||||||||||    
T  4540755 ggtcacatttataagcaaaaaagcattttttagatt-cattcaatacttaatgtatttggtcaatatatagaccgaa 4540680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 17342483 - 17342447
Alignment:
Q  300 tggtcacatttataagtaaaaatcaactttttagatt 336  Q
    |||||||| |||||||||||||||||| |||||||||    
T  17342483 tggtcacaattataagtaaaaatcaacattttagatt 17342447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 38636235 - 38636278
Alignment:
Q  302 gtcacatttataagtaaaaatcaactttttagatttcattgaata 346  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||    
T  38636235 gtcacatttataagcaaaaaacaactttttaga-ttcattgaata 38636278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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