View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1496_high_8 (Length: 376)
Name: NF1496_high_8
Description: NF1496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1496_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 34186434 - 34186794
Alignment:
| Q |
1 |
cattggaggagttgaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186434 |
cattggaggagttgaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtc |
34186533 |
T |
|
| Q |
101 |
gaaggagatttgggattctttaaagaagaaataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186534 |
gaaggagatttgggattctttaaagaagaaataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcg |
34186633 |
T |
|
| Q |
201 |
atgaaaagtggagaatctgttaacgactactttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcggatcttactgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186634 |
atgaaaagtggagaatctgttaacgactactttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcggatcttactgtta |
34186733 |
T |
|
| Q |
301 |
tcgaaaagattcttcgctcaatgaccgctaggtacgattatgtagtatgttctattgaaga |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186734 |
tcgaaaagattcttcgctcaatgaccgctaggtacgattatgtagtatgttctattgaaga |
34186794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 11847703 - 11847771
Alignment:
| Q |
14 |
gaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaat |
82 |
Q |
| |
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|||| ||| ||| |||||||| |||||||| || |||||||||||| ||| | ||||||||||||||| |
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| T |
11847703 |
gaagttgatggacttgaaggccaaaaattacctttttcaagcaatttctcgtgatgtgcttgaaacaat |
11847771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 359
Target Start/End: Original strand, 518345 - 518674
Alignment:
| Q |
30 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtcgaaggagatttgggattctttaaagaaga |
129 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| |||||||||||||||| | || || | ||| ||||||||||| || ||| || || ||| |
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| T |
518345 |
aaggcaaaaaatcacctctttcaagcaattgatcgagttgtgcttgaaacaattttaaaaaacgagacatcgaaggagatcagg--ttccttgaaaaagt |
518442 |
T |
|
| Q |
130 |
aataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgacta |
229 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||||||| | |||| || ||| | ||||| |||||| | ||||||||| ||| |||||| |
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| T |
518443 |
aataccaagtcactgctagagggaagcgagcacagcttcaggccctgtgacgtgactggtagattttacagatgaagaatggagaatcaattatcgacta |
518542 |
T |
|
| Q |
230 |
ctttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattct--tcgctcaatgaccg |
327 |
Q |
| |
|
|||||||| || ||||||||| ||| ||||| |||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
518543 |
ttttgctcgaactgtcacaattgtaaacaagataagaatgcatggtgaacaaatgtcgaatcttactgttatcgaaaagattcttctcgctcaataacct |
518642 |
T |
|
| Q |
328 |
ctaggtacgattatgtagtatgttctattgaa |
359 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
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|
| T |
518643 |
ccaggtacgattatgtagtatgttctattgaa |
518674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 359
Target Start/End: Complemental strand, 367316 - 366988
Alignment:
| Q |
30 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtcgaaggagatttgggattctttaaagaaga |
129 |
Q |
| |
|
|||||||||| | | |||||||||||||||||||||| ||||||||||| |||| | || || | ||| ||||||||||| || ||| || || ||| |
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|
| T |
367316 |
aaggcaaaaagtcacctctttcaagcaattgatcgagttgtgcttgaaataattttaaaaaacgagacatcgaaggagatcagg--ttccttgaaaaagt |
367219 |
T |
|
| Q |
130 |
aataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgacta |
229 |
Q |
| |
|
||||||||| |||||||||| |||| |||| || ||||||||| | |||| || ||| | ||||| |||||| | ||||||||| |||| ||||| |
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|
| T |
367218 |
aataccaagtcactgctagagggaagcgagctcaacttcaggccctgtgacgtgactggtagattttacagatgaagaatggagaatcaattaatgacta |
367119 |
T |
|
| Q |
230 |
ctttgctcgtaccctcacaattgcaaataagatga-gaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattcttcgctcaatgaccgc |
328 |
Q |
| |
|
|||||||| || |||||||||| ||| ||||| | |||||||| |||| |||||| || ||||||| ||| |||||||||||||||||||||| ||| | |
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|
| T |
367118 |
ttttgctcgaactctcacaattgtaaacaagattaagaatgtatagtgaccaaatgtcgaatcttaccgttgtcgaaaagattcttcgctcaataacctc |
367019 |
T |
|
| Q |
329 |
taggtacgattatgtagtatgttctattgaa |
359 |
Q |
| |
|
| ||||||||||||||| |||||||||||| |
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|
| T |
367018 |
catgtacgattatgtagtgtgttctattgaa |
366988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 14864448 - 14864521
Alignment:
| Q |
12 |
ttgaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattct |
85 |
Q |
| |
|
||||||||||||||| | |||||||| |||||| | | ||||||||||||||||| ||| || ||||| ||||| |
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| T |
14864448 |
ttgaagctgaaggatctaaaggcaaagaattatttgtatcaagcaattgatcgagttgttctcgaaaccattct |
14864521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 26545341 - 26545396
Alignment:
| Q |
30 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattct |
85 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| | |||||||||||||||||| |
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|
| T |
26545341 |
aaggcaaaaaattacctctttcaagcaatttctcgtgatgtgcttgaaacaattct |
26545396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 15592569 - 15592637
Alignment:
| Q |
14 |
gaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaat |
82 |
Q |
| |
|
|||| ||| ||| |||||||| |||||||| || |||||||||||| ||| | ||||||||||||||| |
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|
| T |
15592569 |
gaagttgatggacttgaaggccaaaaattacctttttcaagcaatttctcgtgatgtgcttgaaacaat |
15592637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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