View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1496_low_1 (Length: 561)

Name: NF1496_low_1
Description: NF1496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1496_low_1
NF1496_low_1
[»] chr3 (5 HSPs)
chr3 (14-558)||(42450411-42450955)
chr3 (323-453)||(19405743-19405869)
chr3 (383-424)||(13626184-13626225)
chr3 (374-422)||(21695793-21695841)
chr3 (377-424)||(8946171-8946218)
[»] chr7 (3 HSPs)
chr7 (29-230)||(9241471-9241677)
chr7 (335-392)||(48582197-48582254)
chr7 (484-515)||(41936052-41936083)
[»] chr6 (2 HSPs)
chr6 (29-230)||(17718710-17718916)
chr6 (377-423)||(34208140-34208186)
[»] chr5 (8 HSPs)
chr5 (29-230)||(23615561-23615767)
chr5 (29-230)||(23846957-23847163)
chr5 (29-159)||(17038558-17038693)
chr5 (370-424)||(14612565-14612620)
chr5 (377-419)||(14627836-14627878)
chr5 (377-426)||(6038268-6038317)
chr5 (480-517)||(23656116-23656153)
chr5 (480-517)||(23802417-23802454)
[»] scaffold0069 (1 HSPs)
scaffold0069 (29-230)||(39685-39891)
[»] scaffold0003 (2 HSPs)
scaffold0003 (363-450)||(325721-325808)
scaffold0003 (356-454)||(325334-325432)
[»] chr2 (7 HSPs)
chr2 (430-518)||(34233604-34233694)
chr2 (335-377)||(35204339-35204380)
chr2 (323-351)||(187165-187193)
chr2 (325-392)||(9538560-9538627)
chr2 (383-423)||(21557576-21557616)
chr2 (378-422)||(40500646-40500690)
chr2 (377-421)||(43239974-43240018)
[»] scaffold0260 (1 HSPs)
scaffold0260 (383-454)||(20070-20142)
[»] chr4 (3 HSPs)
chr4 (250-302)||(40360917-40360969)
chr4 (370-422)||(19834705-19834757)
chr4 (480-516)||(50492541-50492577)
[»] chr8 (4 HSPs)
chr8 (29-76)||(19449355-19449402)
chr8 (29-76)||(19531674-19531721)
chr8 (377-422)||(30943432-30943477)
chr8 (383-420)||(40639113-40639150)
[»] chr1 (2 HSPs)
chr1 (379-424)||(51394968-51395013)
chr1 (385-423)||(16363764-16363802)
[»] scaffold0318 (1 HSPs)
scaffold0318 (335-392)||(2081-2137)


Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 14 - 558
Target Start/End: Complemental strand, 42450955 - 42450411
Alignment:
Q  14 aaattcacttactctttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcagttgaatcaaaaaatctgaa 113  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||    
T  42450955 aaattcactttctctttgtgaatttccaaatccaaagaaacctaaataaaactagagcactgtcaaatgaaagaatttcagttgaatcaaaaaatctgaa 42450856  T
Q  114 taactcacaaatagaggcagaacatgcaaaaacaaaatttgaacgaatctaaaactcaagcaaaagtaggaatctcaagaattcatcaaacaatattcag 213  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42450855 taactcacaaatagaggtagaacacgcaaaaacaaaatttgaacgaatctaaaactcaagcaaaagtagaaatctcaagaattcatcaaacaatattcag 42450756  T
Q  214 aaatcagaccttataatgttttatgcaaaacacccaaacaccgtgagtagatgcaagaagagtcagacacaagctgcaatacaccgaacnnnnnnnttgg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  42450755 aaatcagaccttataatgttttatgcaaaacacccaaacaccgtgagtagatgcaagaagagtcagacacaagctgcaatacaccgaacaaaaaaattgg 42450656  T
Q  314 aatttgggtgaaagaaaactagcgtgagttaactcatgttgggggttcagtgtgagttttcagcgtgatttaagtcacgtaagttgtatttcaacgtgac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42450655 aatttgggtgaaagaaaactagcgtgagttaactcatgttgggggttcagtgtgaattttcagcgtgatttaagtcacgtaagttgtatttcaacgtgac 42450556  T
Q  414 ttaagtcacgtggtgttaacacctgcgtaagttaactcacgcgtgatattttctgaagtttggttggagcgagcaaaacgtgacgggagaagagcaattt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42450555 ttaagtcacgtggtgttaacacctgcgtaagttaactcacgcgtggtattttctgaagtttggttggagcgagcaaaacgtgacgggagaagagcaattt 42450456  T
Q  514 tcataccatagtgagtgagagcaaatcctacggcccgggcaacat 558  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||    
T  42450455 tcataccatagtgagtgagagaaaatcctacggcctgggcaacat 42450411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 453
Target Start/End: Original strand, 19405743 - 19405869
Alignment:
Q  323 gaaagaaaactagcgtgagttaactcatgttgggggttcagtgtgagttttcagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcac 422  Q
    ||||||||||  |||| |||||||| | ||||||| || | |||||||||| |||   | |||||||||||| ||||||||||| |||||||||||| |     
T  19405743 gaaagaaaacctgcgtaagttaactgacgttggggttt-attgtgagtttttagc---acttaagtcacgtaggttgtatttcagcgtgacttaagtaag 19405838  T
Q  423 gtggtgttaacacctgcgtaagttaactcac 453  Q
     |||  |||||| |||| |||||||||||||    
T  19405839 ttgggtttaacatctgcataagttaactcac 19405869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 13626225 - 13626184
Alignment:
Q  383 ttaagtcacgtaagttgtatttcaacgtgacttaagtcacgt 424  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  13626225 ttaagtcacgtaggttgtatttcagcgtgacttaagtcacgt 13626184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 21695793 - 21695841
Alignment:
Q  374 cagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcac 422  Q
    |||||||| |||||||| | |||||||||| ||||||||||||||||||    
T  21695793 cagcgtgacttaagtcaaggaagttgtattccaacgtgacttaagtcac 21695841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 424
Target Start/End: Complemental strand, 8946218 - 8946171
Alignment:
Q  377 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacgt 424  Q
    ||||||||||||||||||| |||||||| |  ||||||||||||||||    
T  8946218 cgtgatttaagtcacgtaaattgtattttagagtgacttaagtcacgt 8946171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 9241677 - 9241471
Alignment:
Q  29 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcagttg----aatcaaaaaatctgaataactcacaaa 124  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||||| ||||||||| ||||||| |     ||| ||||||||| | |||| || |||    
T  9241677 ttgtgaatttccaaatcaaaagaagcctcaagaaaaccagagcacagtcaaatgaatgcatttcagatagctcaattaaaaaatctaagtaacacataaa 9241578  T
Q  125 tagaggcagaacatg-caaaaacaaaatttgaacgaatctaaaactcaagcaaaagtaggaatctcaagaattcatcaaacaatattcagaaatcagacc 223  Q
     |||||||||||| | | ||||||||||| ||| || ||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||    
T  9241577 cagaggcagaacacggctaaaacaaaattcgaatgactctgaaactcaagcaaaaggaggaatcacaagaattcatcaaacaatgttcagaaatcagacc 9241478  T
Q  224 ttataat 230  Q
    |||||||    
T  9241477 ttataat 9241471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 48582254 - 48582197
Alignment:
Q  335 gcgtgagttaactcatgttgggggttcagtgtgagttttcagcgtgatttaagtcacg 392  Q
    ||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||    
T  48582254 gcgtgagttaactcacgctgggggttcagtgtgaattttcagcgtgacttaagtcacg 48582197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 515
Target Start/End: Original strand, 41936052 - 41936083
Alignment:
Q  484 gagcaaaacgtgacgggagaagagcaattttc 515  Q
    ||||||||||||||||||||||||||||||||    
T  41936052 gagcaaaacgtgacgggagaagagcaattttc 41936083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 17718916 - 17718710
Alignment:
Q  29 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcagttg----aatcaaaaaatctgaataactcacaaa 124  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||||| ||||||||| ||||||| |     ||| ||||||||| | |||| || |||    
T  17718916 ttgtgaatttccaaatcaaaagaagcctcaagaaaaccagagcacagtcaaatgaatgcatttcagatagctcaattaaaaaatctaagtaacacataaa 17718817  T
Q  125 tagaggcagaacatg-caaaaacaaaatttgaacgaatctaaaactcaagcaaaagtaggaatctcaagaattcatcaaacaatattcagaaatcagacc 223  Q
     |||||||||||| | | ||||||||||| |||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||    
T  17718816 cagaggcagaacacggctaaaacaaaattcgaacgactctgaaactcaagcaaaaggaggaatcacaagaattcatcaaacaatgttcagaaatcaaacc 17718717  T
Q  224 ttataat 230  Q
    |||||||    
T  17718716 ttataat 17718710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 423
Target Start/End: Complemental strand, 34208186 - 34208140
Alignment:
Q  377 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacg 423  Q
    ||||| |||||||||||| |||||||| |||||||||||||||||||    
T  34208186 cgtgacttaagtcacgtatgttgtattccaacgtgacttaagtcacg 34208140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 23615767 - 23615561
Alignment:
Q  29 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcagttg----aatcaaaaaatctgaataactcacaaa 124  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||||| ||||||||| ||||||| |     ||| ||||||||| | |||| || |||    
T  23615767 ttgtgaatttccaaatcaaaagaagcctcaagaaaaccagagcacagtcaaatgaatgcatttcagatagctcaattaaaaaatctaagtaacacataaa 23615668  T
Q  125 tagaggcagaacatg-caaaaacaaaatttgaacgaatctaaaactcaagcaaaagtaggaatctcaagaattcatcaaacaatattcagaaatcagacc 223  Q
     |||||||||||| | | ||||||||||| |||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||    
T  23615667 cagaggcagaacacggctaaaacaaaattcgaacgactctgaaactcaagcaaaaggaggaatcacaagaattcatcaaacaatgttcagaaatcaaacc 23615568  T
Q  224 ttataat 230  Q
    |||||||    
T  23615567 ttataat 23615561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 23847163 - 23846957
Alignment:
Q  29 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcagttg----aatcaaaaaatctgaataactcacaaa 124  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||||| ||||||||| ||||||| |     ||| ||||||||| | |||| || |||    
T  23847163 ttgtgaatttccaaatcaaaagaagcctcaagaaaaccagagcacagtcaaatgaatgcatttcagatagctcaattaaaaaatctaagtaacacataaa 23847064  T
Q  125 tagaggcagaacatg-caaaaacaaaatttgaacgaatctaaaactcaagcaaaagtaggaatctcaagaattcatcaaacaatattcagaaatcagacc 223  Q
     |||||||||||| | | ||||||||||| |||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||    
T  23847063 cagaggcagaacacggctaaaacaaaattcgaacgactctgaaactcaagcaaaaggaggaatcacaagaattcatcaaacaatgttcagaaatcaaacc 23846964  T
Q  224 ttataat 230  Q
    |||||||    
T  23846963 ttataat 23846957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 17038558 - 17038693
Alignment:
Q  29 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcagttgaatcaa-----aaaatctgaataactcacaa 123  Q
    |||| |||||||||||| |||||| |||||| ||||| ||||| |||| ||||||||| ||||||| |   ||||     ||||||| |||||| |||||    
T  17038558 ttgtaaatttccaaatcaaaagaagcctaaa-aaaaccagagcgcagtcaaatgaatgcatttcagatagctcaattaaaaaaatctaaataacacacaa 17038656  T
Q  124 atagaggcagaaca-tgcaaaaacaaaatttgaacga 159  Q
    | ||||||||||||  |||||||||||||||||||||    
T  17038657 acagaggcagaacacggcaaaaacaaaatttgaacga 17038693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 424
Target Start/End: Original strand, 14612565 - 14612620
Alignment:
Q  370 ttttcagcgtgatttaagtcacgtaagttgtat-ttcaacgtgacttaagtcacgt 424  Q
    |||||||||||| |||||||||||| |||||||  ||||| |||||||||||||||    
T  14612565 ttttcagcgtgacttaagtcacgtaggttgtataatcaacatgacttaagtcacgt 14612620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 419
Target Start/End: Complemental strand, 14627878 - 14627836
Alignment:
Q  377 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagt 419  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||    
T  14627878 cgtgacttaagtcacgtacgttatatttcaacgtgacttaagt 14627836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 6038268 - 6038317
Alignment:
Q  377 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacgtgg 426  Q
    ||||| |||||||||||||||||||||||| ||| |||||| ||| ||||    
T  6038268 cgtgacttaagtcacgtaagttgtatttcagcgtaacttaaatcatgtgg 6038317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 517
Target Start/End: Complemental strand, 23656153 - 23656116
Alignment:
Q  480 gagcgagcaaaacgtgacgggagaagagcaattttcat 517  Q
    ||||||||||||||||| || |||||||||||||||||    
T  23656153 gagcgagcaaaacgtgatggaagaagagcaattttcat 23656116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 23802417 - 23802454
Alignment:
Q  480 gagcgagcaaaacgtgacgggagaagagcaattttcat 517  Q
    ||||||||||||||||| || |||||||||||||||||    
T  23802417 gagcgagcaaaacgtgatggaagaagagcaattttcat 23802454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 39891 - 39685
Alignment:
Q  29 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcagttg----aatcaaaaaatctgaataactcacaaa 124  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||||| ||||||| |     ||| ||||||||| | |||| || |||    
T  39891 ttgtgaatttccaaatcaaaagaagcctcaagaaaactagagcacagtcaaatgaatgcatttcagatagctcaattaaaaaatctaagtaacacataaa 39792  T
Q  125 tagaggcagaacatg-caaaaacaaaatttgaacgaatctaaaactcaagcaaaagtaggaatctcaagaattcatcaaacaatattcagaaatcagacc 223  Q
     |||||||||||| | | ||||||||||| ||| || ||| ||||||||||||||| ||||||| ||  ||||||||||||||| ||||||||| |||||    
T  39791 cagaggcagaacacggctaaaacaaaattcgaatgactctgaaactcaagcaaaaggaggaatcacagtaattcatcaaacaatgttcagaaattagacc 39692  T
Q  224 ttataat 230  Q
    |||||||    
T  39691 ttataat 39685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 363 - 450
Target Start/End: Original strand, 325721 - 325808
Alignment:
Q  363 gtgtgagttttcagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacgtggtgttaacacctgcgtaagttaact 450  Q
    ||||||||||| ||||||| |||||||| ||| ||||||||||| ||||| |||||| |  |||  ||||||||||||||||||||||    
T  325721 gtgtgagtttttagcgtgacttaagtcatgtaggttgtatttcagcgtgatttaagtaagttggatttaacacctgcgtaagttaact 325808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 454
Target Start/End: Complemental strand, 325432 - 325334
Alignment:
Q  356 gggttcagtgtgagttttcagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacgtggtgttaacacctgcgtaagttaactcacg 454  Q
    |||||||||||||||||| || |||| |||| ||||||| ||| |||||||  ||||||||||| |  |||  ||||||||||||| ||||||||||||    
T  325432 gggttcagtgtgagtttttagtgtgacttaaatcacgtaggttatatttcagtgtgacttaagtaagttgggtttaacacctgcgtgagttaactcacg 325334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 518
Target Start/End: Original strand, 34233604 - 34233694
Alignment:
Q  430 taacacctgcgtaagttaactcacgcgtga-tattttctgaagtttggttgg-agcgagcaaaacgtgacgggagaagagcaattttcata 518  Q
    |||||||||||| ||||||||||||| ||| ||||||  ||||||||||||| || ||||||||||||| || ||||||| | ||||||||    
T  34233604 taacacctgcgtgagttaactcacgcatgagtattttgggaagtttggttggaagtgagcaaaacgtgatggaagaagagaatttttcata 34233694  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 35204380 - 35204339
Alignment:
Q  335 gcgtgagttaactcatgttgggggttcagtgtgagttttcagc 377  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  35204380 gcgtgagttaactcatgtt-ggggttcagtgtgaattttcagc 35204339  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 187165 - 187193
Alignment:
Q  323 gaaagaaaactagcgtgagttaactcatg 351  Q
    |||||||||||||||||||||||||||||    
T  187165 gaaagaaaactagcgtgagttaactcatg 187193  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 9538627 - 9538560
Alignment:
Q  325 aagaaaactagcgtgagttaactcatgttgggggttcagtgtgag-ttttcagcgtgatttaagtcacg 392  Q
    ||||||||||||||||||||||||| | | || |||||||||| | |||||||||||| |||| |||||    
T  9538627 aagaaaactagcgtgagttaactcacgct-ggagttcagtgtgtgtttttcagcgtgaattaactcacg 9538560  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 21557576 - 21557616
Alignment:
Q  383 ttaagtcacgtaagttgtatttcaacgtgacttaagtcacg 423  Q
    ||||||||| || ||||||||||| ||||||||||||||||    
T  21557576 ttaagtcacataggttgtatttcagcgtgacttaagtcacg 21557616  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 40500690 - 40500646
Alignment:
Q  378 gtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcac 422  Q
    |||| |||||||||||| |||||||| ||||||||| ||||||||    
T  40500690 gtgacttaagtcacgtaggttgtattccaacgtgacataagtcac 40500646  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 43240018 - 43239974
Alignment:
Q  377 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtca 421  Q
    ||||| |||||||||||| ||| |||| |||||||||||||||||    
T  43240018 cgtgacttaagtcacgtaggttatattacaacgtgacttaagtca 43239974  T

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Target: scaffold0260 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 454
Target Start/End: Complemental strand, 20142 - 20070
Alignment:
Q  383 ttaagtcacgtaagttgtatttcaacgtgacttaagtcacg-tggtgttaacacctgcgtaagttaactcacg 454  Q
    |||||||||||| |||||||| ||||||||||||||||||| | |  |||||| ||||||||||||| |||||    
T  20142 ttaagtcacgtaggttgtattccaacgtgacttaagtcacgcttgatttaacatctgcgtaagttaagtcacg 20070  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 40360969 - 40360917
Alignment:
Q  250 aacaccgtgagtagatgcaagaagagtcagacacaagctgcaatacaccgaac 302  Q
    |||||| |||||||||||||||||||||||| ||||| ||||||||| |||||    
T  40360969 aacaccttgagtagatgcaagaagagtcagatacaagttgcaatacaacgaac 40360917  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 19834757 - 19834705
Alignment:
Q  370 ttttcagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcac 422  Q
    |||||| ||| |||||||||||||||||||||||||||| | |||||| ||||    
T  19834757 ttttcaacgtaatttaagtcacgtaagttgtatttcaacataacttaaatcac 19834705  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 516
Target Start/End: Complemental strand, 50492577 - 50492541
Alignment:
Q  480 gagcgagcaaaacgtgacgggagaagagcaattttca 516  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  50492577 gagcgagcaaaacgtgaggggagaagagcagttttca 50492541  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 19449355 - 19449402
Alignment:
Q  29 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagt 76  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  19449355 ttgtgaatttccaaatcaaaagaagcctcaagaaaactagagcacagt 19449402  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 19531721 - 19531674
Alignment:
Q  29 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagt 76  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  19531721 ttgtgaatttccaaatcaaaagaagcctcaagaaaactagagcacagt 19531674  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 30943477 - 30943432
Alignment:
Q  377 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcac 422  Q
    ||||| |||| |||||||| ||||||| ||||||||||||||||||    
T  30943477 cgtgacttaaatcacgtaacttgtattccaacgtgacttaagtcac 30943432  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Complemental strand, 40639150 - 40639113
Alignment:
Q  383 ttaagtcacgtaagttgtatttcaacgtgacttaagtc 420  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  40639150 ttaagtcacgtaggttgtacttcaacgtgacttaagtc 40639113  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 424
Target Start/End: Complemental strand, 51395013 - 51394968
Alignment:
Q  379 tgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacgt 424  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||    
T  51395013 tgatttaagtcacgtaagttatattacaacgtgacctaagtcacgt 51394968  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 423
Target Start/End: Original strand, 16363764 - 16363802
Alignment:
Q  385 aagtcacgtaagttgtatttcaacgtgacttaagtcacg 423  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  16363764 aagtcacgtaggttgtattccaacgtgacttaagtcacg 16363802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 2081 - 2137
Alignment:
Q  335 gcgtgagttaactcatgttgggggttcagtgtgagttttcagcgtgatttaagtcacg 392  Q
    ||||||||||||||||| ||| | |||||||||| |||||||||||| ||||| ||||    
T  2081 gcgtgagttaactcatgctggag-ttcagtgtgaattttcagcgtgacttaagccacg 2137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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