View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1496_low_11 (Length: 282)
Name: NF1496_low_11
Description: NF1496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1496_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 33299964 - 33300215
Alignment:
| Q |
11 |
catcatcatttctgctgtcatcagtcttgtggactatcaggcagcaattttgatctggaagactgataaattcgattttgttgcctgcatgggagcattc |
110 |
Q |
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| T |
33299964 |
catcatcatttctgccgtcatcagtcttgtggactatcaggcagcaattttgatctggaagactgataaattcgattttgttgcctgcatgggagcattc |
33300063 |
T |
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| Q |
111 |
tttggggttgttttcgtctcggttgagataggacttctaattgctgtaagtaccaaatcttagttatcctatgctctaaattgtcaaagtaattcctaat |
210 |
Q |
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| T |
33300064 |
tttggggttgttttcgtctcggttgagataggacttctaattgctgtaagtaccaaatcttagttatcctatgctctaaattgtcaaagtaattcctaat |
33300163 |
T |
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| Q |
211 |
agggg-gagtgtacataagacataatattcttcaaaccaaccttaaatttaa |
261 |
Q |
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| T |
33300164 |
aggggagggtgtacataagacataatattcttcaaaccaaccttaaatttaa |
33300215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 25721329 - 25721484
Alignment:
| Q |
12 |
atcatcatttctgctgtcatcagtcttgtggactatcaggcagcaattttgatctggaagactgataaattcgattttgttgcctgcatgggagcattct |
111 |
Q |
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| T |
25721329 |
atcatcatttgtgcagtcatcaaccttgttgactataaggcagcaattttgatatggaaaattgataaatttgactttgttgcttgcatgggagcatttt |
25721428 |
T |
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| Q |
112 |
ttggggttgttttcgtctcggttgagataggacttctaattgctgtaagtaccaaa |
167 |
Q |
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| T |
25721429 |
tcggggttgtttttgcctcggttgagataggacttttgattgctgtaagtaccaaa |
25721484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 13765586 - 13765554
Alignment:
| Q |
250 |
ccttaaatttaaggcttaattgtacttttggac |
282 |
Q |
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| T |
13765586 |
ccttaaatttaaggcttaattgcacttttggac |
13765554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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