View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1496_low_16 (Length: 247)

Name: NF1496_low_16
Description: NF1496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1496_low_16
NF1496_low_16
[»] chr6 (1 HSPs)
chr6 (1-130)||(35209229-35209358)
[»] chr4 (4 HSPs)
chr4 (102-227)||(33833925-33834048)
chr4 (102-227)||(37917711-37917834)
chr4 (1-83)||(33834098-33834180)
chr4 (135-183)||(7567302-7567350)
[»] chr8 (1 HSPs)
chr8 (102-196)||(36999991-37000085)
[»] chr1 (2 HSPs)
chr1 (1-86)||(19937604-19937689)
chr1 (135-194)||(52963303-52963362)
[»] chr3 (1 HSPs)
chr3 (131-184)||(55250608-55250661)
[»] chr7 (1 HSPs)
chr7 (135-183)||(8984034-8984082)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 35209358 - 35209229
Alignment:
Q  1 taataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgttcacagatgaacgtctacaaagctatttgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35209358 taataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgttcacagatgaacgtctacaaagctatttgct 35209259  T
Q  101 aaataactttgctttatttttcaaaccaaa 130  Q
    ||||||||||||||||||||||||||||||    
T  35209258 aaataactttgctttatttttcaaaccaaa 35209229  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 33834048 - 33833925
Alignment:
Q  102 aataactttgctttatttttcaaaccaaactcaaggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaaggccgaactcccctgtgagc 201  Q
    |||||| |||||  ||||| |||||||| ||| ||||||||| || ||||||||||||||||| |||||| |||||||||||||| |||||||  |||||    
T  33834048 aataaccttgctgaattttccaaaccaagctcgaggtgattgttttagaccatacaatgatttttgtaacttgcaaacaaggccgtactcccc-ctgagc 33833950  T
Q  202 aaataaaactagatggttgctccata 227  Q
     |||||| | || |||||||||||||    
T  33833949 -aataaagccaggtggttgctccata 33833925  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 37917711 - 37917834
Alignment:
Q  102 aataactttgctttatttttcaaaccaaactcaaggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaaggccgaactcccctgtgagc 201  Q
    |||||| |||||  ||||| |||||||| ||  ||||||||| || ||||||||||||||||| |||||| |||||||||||||  || ||||| |||||    
T  37917711 aataaccttgctgaattttccaaaccaagcttgaggtgattgttttagaccatacaatgatttttgtaacttgcaaacaaggccatacccccct-tgagc 37917809  T
Q  202 aaataaaactagatggttgctccata 227  Q
     |||||| | || |||||||||||||    
T  37917810 -aataaagccaggtggttgctccata 37917834  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33834180 - 33834098
Alignment:
Q  1 taataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgttcacagatgaacgt 83  Q
    |||| ||||| ||||||||||| | ||| ||||| |||||||| || || ||||||||||| | || ||||| ||||||||||    
T  33834180 taatgccttcctgatcattaccagtaataacaatgtcatctacatatactacaagataaatgacttggttcaaagatgaacgt 33834098  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 7567302 - 7567350
Alignment:
Q  135 aggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaagg 183  Q
    ||||||||| || ||||||||||||||||| ||| || |||||||||||    
T  7567302 aggtgattgatttagaccatacaatgatttttgttacttgcaaacaagg 7567350  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 37000085 - 36999991
Alignment:
Q  102 aataactttgctttatttttcaaaccaaactcaaggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaaggccgaactcccctg 196  Q
    |||||| |||||  ||||| |||||||| ||| ||||||||| || ||||||||||||||||| |||||| || |||||||  || |||||||||    
T  37000085 aataaccttgctgaattttccaaaccaagctcgaggtgattgttttagaccatacaatgatttttgtaacttgaaaacaagatcgtactcccctg 36999991  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 19937604 - 19937689
Alignment:
Q  1 taataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgttcacagatgaacgtcta 86  Q
    |||| ||||||||||||| ||  | ||| |||||||||||||  || |||||||||||||| | |||||||| |||||||||||||    
T  19937604 taatgccttcttgatcatcacaagtaataacaatatcatctaaatataccacaagataaatgactttgttcaaagatgaacgtcta 19937689  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 52963362 - 52963303
Alignment:
Q  135 aggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaaggccgaactcccc 194  Q
    ||||||||| || | ||||||||||||||| |||||| |||||||||||||  |||||||    
T  52963362 aggtgattgttttaaaccatacaatgatttttgtaacatgcaaacaaggccatactcccc 52963303  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 55250608 - 55250661
Alignment:
Q  131 ctcaaggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaaggc 184  Q
    |||||||||||| ||| ||||||||||| ||||| | |||||| ||||||||||    
T  55250608 ctcaaggtgattactttagaccatacaaggatttttataacctacaaacaaggc 55250661  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 8984082 - 8984034
Alignment:
Q  135 aggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaagg 183  Q
    ||||||||| || ||||||||||||||||| ||| || |||||||||||    
T  8984082 aggtgattgatttagaccatacaatgatttttgttacttgcaaacaagg 8984034  T

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