View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1496_low_17 (Length: 239)
Name: NF1496_low_17
Description: NF1496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1496_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8672095 - 8671875
Alignment:
| Q |
1 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8672095 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatca |
8671996 |
T |
|
| Q |
101 |
ttttttcaatgtcgaacattgacaacctgtctttgttgttagtaatggtgatagcgtttatattgcctgtggatatttccctagcagtaacagttaggat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8671995 |
ttttttcaatgtcgaacattgacaacctgtctttgttgttagtaatggtgatagcatttatattgcctgtggatatttccctagcagtaacagttaggat |
8671896 |
T |
|
| Q |
201 |
gcaatataaggtggtcatggg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8671895 |
gcaatataaggtggtcatggg |
8671875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 8666561 - 8666760
Alignment:
| Q |
1 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
8666561 |
ttcttcatattgtaaacacaagaatctaattcacacattaccttggcccttcttaaaaattgcatatcttccacatggtatttctcagcttctttaatca |
8666660 |
T |
|
| Q |
101 |
ttttttcaatgtcgaacattgacaacctgtctttgttgttagtaatggtgatagcgtttatattgcctgtggatatttccctagcagtaacagttaggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || || |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8666661 |
ttttttcaatgtcgaacattgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaacagtcaggat |
8666760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 10495397 - 10495196
Alignment:
| Q |
1 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |||| ||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
10495397 |
ttcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccttaagaatttcatatcttcgacatggtatttcttagcttctttaatca |
10495298 |
T |
|
| Q |
101 |
ttttttcaatgtcgaacattgacaacctgtctttgttgttagtaatggtgatagcgtttatattgcctgtggatatttccctagcagtaacagttaggat |
200 |
Q |
| |
|
|||||| ||| || |||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||| ||||| ||| ||||||||||||| ||||| |
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|
| T |
10495297 |
tttttttaatttctaacattgacaacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaacagtcaggat |
10495198 |
T |
|
| Q |
201 |
gc |
202 |
Q |
| |
|
|| |
|
|
| T |
10495197 |
gc |
10495196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 13334391 - 13334190
Alignment:
| Q |
1 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |||| | ||||||| ||||| |||| || |||||||||||||| |
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|
| T |
13334391 |
ttcttcatattgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatca |
13334292 |
T |
|
| Q |
101 |
ttttttcaatgtcgaacattgacaacctgtctttgttgttagtaatggtgatagcgtttatattgcctgtggatatttccctagcagtaacagttaggat |
200 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||||| ||||| ||| |||||||||| || ||||| |
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|
| T |
13334291 |
ttttttcaatttctaacattgataacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaaccgtcaggat |
13334192 |
T |
|
| Q |
201 |
gc |
202 |
Q |
| |
|
|| |
|
|
| T |
13334191 |
gc |
13334190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 8653590 - 8653740
Alignment:
| Q |
2 |
tcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatcat |
101 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| | ||||| |||||| | || ||||||| ||||||||||||| | |||||||||||||||| |||| | |
|
|
| T |
8653590 |
tctttatattgtaaacacaagaatccaatgcgcttattactttggccttcctcaaaaatttcatatcttccacacggtatttctcagcttcttcaatctt |
8653689 |
T |
|
| Q |
102 |
tttttcaatgtcgaacattgacaacctgtctttgttgttagtaatggtgat |
152 |
Q |
| |
|
||||||||| || ||| |||||||||| ||||| | ||||| |||||||| |
|
|
| T |
8653690 |
tttttcaatttcaaactttgacaacctttctttctcattagtgatggtgat |
8653740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 8653349 - 8653405
Alignment:
| Q |
19 |
caagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccaca |
75 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||| | |||||||||| ||||||||||||| |
|
|
| T |
8653349 |
caagaatccaatgcactcattaccgtggccttccttaaaaatttcatatcttccaca |
8653405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 8658505 - 8658608
Alignment:
| Q |
1 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatca |
100 |
Q |
| |
|
||||||| |||||||||||| |||| || || |||||| |||||| | |||||||||| | ||||||||| | | ||| |||||||||||| ||||| |
|
|
| T |
8658505 |
ttcttcactttgtaaacacaataatccaaatcattcattactttggccttccttaaaaattccttatcttccatacggtatctctcagcttcttcaatca |
8658604 |
T |
|
| Q |
101 |
tttt |
104 |
Q |
| |
|
|||| |
|
|
| T |
8658605 |
tttt |
8658608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 9336917 - 9336716
Alignment:
| Q |
1 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9336917 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttcgcagcttctttaatca |
9336818 |
T |
|
| Q |
101 |
ttttttcaatgtcgaacattgacaacctgtctttgttgttagtaatggtgatagcgtttatattgcctgtggatatttccctagcagtaacagttaggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9336817 |
ttttttcaatgtcgaacattgacaacctttctttgtcattagtaatggtgattgcgttcatattgcctgtagatatttccctagcagtaacagttaggat |
9336718 |
T |
|
| Q |
201 |
gc |
202 |
Q |
| |
|
|| |
|
|
| T |
9336717 |
gc |
9336716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 29464994 - 29465195
Alignment:
| Q |
1 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||| | |||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29464994 |
ttcttcatattgtaaacacaagaatctaatgcactcattacattggccttccttacgaattgcatatcttccacatggtatttctcagcttctttaatca |
29465093 |
T |
|
| Q |
101 |
ttttttcaatgtcgaacattgacaacctgtctttgttgttagtaatggtgatagcgtttatattgcctgtggatatttccctagcagtaacagttaggat |
200 |
Q |
| |
|
|||||||||| || ||| |||| ||||| |||||| |||||||||||||| | || |||||| | || ||||||||| ||||||||||||||||||| |
|
|
| T |
29465094 |
ttttttcaatttctaacgttgataacctttctttgccattagtaatggtgatcacattcatattgtcagtagatatttccttagcagtaacagttaggat |
29465193 |
T |
|
| Q |
201 |
gc |
202 |
Q |
| |
|
|| |
|
|
| T |
29465194 |
gc |
29465195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 29214612 - 29214505
Alignment:
| Q |
4 |
ttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatc-att |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
29214612 |
ttcatattgtaaacacaagaatctaatgcactcgttaccttggccttccttaagaattgcatatcttccacatggtatttctcagcttctttaatcaatt |
29214513 |
T |
|
| Q |
103 |
ttttcaat |
110 |
Q |
| |
|
|||||||| |
|
|
| T |
29214512 |
ttttcaat |
29214505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 4679577 - 4679472
Alignment:
| Q |
1 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatca |
100 |
Q |
| |
|
||||| ||||||||||||||| | || ||||||| ||||||||| ||| | |||||||||| | |||||||| | |||||||||||||||||| ||||| |
|
|
| T |
4679577 |
ttcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaatca |
4679478 |
T |
|
| Q |
101 |
tttttt |
106 |
Q |
| |
|
||||| |
|
|
| T |
4679477 |
gttttt |
4679472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 16658546 - 16658347
Alignment:
| Q |
1 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatca |
100 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||||||||||| || |||||||| | |||||||||| || ||| |||||||||||| ||||| |
|
|
| T |
16658546 |
ttcttcatattgtaaacacaataatccaatgcattcattaccttggccttttgtaaaaatttcttatcttccacgtggtatctctcagcttcttcaatca |
16658447 |
T |
|
| Q |
101 |
ttttttcaatgtcgaacattgacaacctgtctttgttgttagtaatggtgatagcgtttatattgcctgtggatatttccctagcagtaacagttaggat |
200 |
Q |
| |
|
|||||| ||| || || ||||||| || ||||| | || || |||||||| |||| |||| ||||| |||| |||| |||||| |||||||||||| |
|
|
| T |
16658446 |
tttttttaatttccaaggttgacaatctttctttttcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcagaaacagttaggat |
16658347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 28910519 - 28910621
Alignment:
| Q |
1 |
ttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatca |
100 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||| |||||| |||||| |||||| ||||| |||||| ||||| || |||||||||||||| |||| |
|
|
| T |
28910519 |
ttcttcatcttgtaaacacaataatgtaatgcattcattacattggcctttcttagaaatttttcatcttctacatggtaattctcagcttctttgatca |
28910618 |
T |
|
| Q |
101 |
ttt |
103 |
Q |
| |
|
||| |
|
|
| T |
28910619 |
ttt |
28910621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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