View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1496_low_2 (Length: 507)
Name: NF1496_low_2
Description: NF1496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1496_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 224 - 497
Target Start/End: Original strand, 8672873 - 8673146
Alignment:
| Q |
224 |
tagacatcagtacaagcttgccggtgtcgaacaataacacgtttcagacattagacatgccttctatttcaaggaagtataatgatccaattactcagaa |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8672873 |
tagacatcagtacaagcttgccggtgtcgaacaataacacgtttcagacattagacatgccttcgatttcaaggaagtataacgatccaattactcagaa |
8672972 |
T |
|
| Q |
324 |
ttatctaatgttatggccctctaagctcattcagagtgatccaataatttctgtctacggtcctcataaagattaagaacctcgtgtgaaaaagtaaaaa |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8672973 |
ttatctaatgttatggccctctaagctcattcagagtgatccgataatttctgtctacagtcctcataaagattaagaacctcgtgtgaaaaagaaaaaa |
8673072 |
T |
|
| Q |
424 |
taacatctgcgtttgctgttgataccactactgagatagatgctttctttggaaaatattgatttttgttcatc |
497 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8673073 |
taacatctgcgtttgctgttgataccattactgagatagatgttttctttggaaaatattgatttttgttcatc |
8673146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 8666472 - 8666249
Alignment:
| Q |
1 |
cttgataagaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggatggaatgtcgaaactccttatatccaaggctaataatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8666472 |
cttgataagaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggagagaatgtcgaaacaccttatatccaaggctaataatt |
8666373 |
T |
|
| Q |
101 |
ttatttttcttggataagattttaagtgatgtcttgcttttgaaagtgctgaatgcagacctttagttttattatcattatctaatagcattgttgttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8666372 |
ttatttttcttggataagattttaagtgatgtcttgcttttgaaagtgctgaatgcagacctttagttttattatcattatctaatagcattgaagttta |
8666273 |
T |
|
| Q |
201 |
tgttaatgtttgtgtttcacatgt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
8666272 |
tgttaatgtttgtgtttcacatgt |
8666249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8672184 - 8672407
Alignment:
| Q |
1 |
cttgataagaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggatggaatgtcgaaactccttatatccaaggctaataatt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8672184 |
cttgatatgaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggagagaatgtcgaaacaccttatatccaaggctaataatt |
8672283 |
T |
|
| Q |
101 |
ttatttttcttggataagattttaagtgatgtcttgcttttgaaagtgctgaatgcagacctttagttttattatcattatctaatagcattgttgttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8672284 |
ttatttttcttggataagattttaagtgatgtcttgcttttgaaagtgctgaatgcagacctttagttttattatcattatctaatagcattgaagttta |
8672383 |
T |
|
| Q |
201 |
tgttaatgtttgtgtttcacatgt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
8672384 |
tgttaatgtttgtgtttcacatgt |
8672407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13334480 - 13334701
Alignment:
| Q |
1 |
cttgataagaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggatggaatgtcgaaactccttatatccaaggctaataatt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||| ||| ||||| ||| ||||||||| |
|
|
| T |
13334480 |
cttgataagaataataaagagaaagaaatagatgttcttgagggtcatctcgaggagctggagagcatgtcgaaacacctgatatcaaagactaataatt |
13334579 |
T |
|
| Q |
101 |
ttatttttcttggataagattttaagtgatgtcttgcttttgaaagtgctgaatgcagacctttagttttattatcattatctaatagcattgttgttta |
200 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13334580 |
ttatttttctgtgataagatttgaagtgatgtcttgcttttgaaagtgctgaatgcaaacttttagttttattatcattatctaatagcattgaagttta |
13334679 |
T |
|
| Q |
201 |
tgttaatgtttgtgtttcacat |
222 |
Q |
| |
|
|| |||||||| ||||| |||| |
|
|
| T |
13334680 |
tgataatgtttctgtttaacat |
13334701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10495486 - 10495706
Alignment:
| Q |
1 |
cttgataagaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggatggaatgtcgaaactccttatatccaaggctaataatt |
100 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||||||||||||| | |||||||||||||||| | |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
10495486 |
cttgataagagtaataaagagaaaaaaatagatgttcttgagaatcatctggaggagctggagagcatgtcgaaacaccttatatccaagactaataatt |
10495585 |
T |
|
| Q |
101 |
ttatttttcttggataagattttaagtgatgtcttgcttttgaaagtgctgaatgcagacctttagttttattatcattatctaatagcattgttgttta |
200 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||| |
|
|
| T |
10495586 |
ttatttttctttgataagatttaaagtgaagtcttgcttttgaaagtgctgaatgcaga-ctttgtttttattatcattatctaatagtattgaagttta |
10495684 |
T |
|
| Q |
201 |
tgttaatgtttgtgtttcacat |
222 |
Q |
| |
|
|| |||| ||||||||| |||| |
|
|
| T |
10495685 |
tgataatatttgtgtttaacat |
10495706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 243 - 389
Target Start/End: Complemental strand, 8665442 - 8665296
Alignment:
| Q |
243 |
gccggtgtcgaacaataacacgtttcagacattagacatgccttctatttcaaggaagtataatgatccaattactcagaattatctaatgttatggccc |
342 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| ||||||||||| || |||||||| |||| |||||||| || ||| ||| ||||||||||||||||| |
|
|
| T |
8665442 |
gccggtgtagaacaataacatgtttcagacattggacatgccttccatgtcaaggaactatagtgatccaactattcacaatgatctaatgttatggccc |
8665343 |
T |
|
| Q |
343 |
tctaagctcattcagagtgatccaataatttctgtctacggtcctca |
389 |
Q |
| |
|
||||||||||||| || |||||| || |||||||||||| ||||||| |
|
|
| T |
8665342 |
tctaagctcattcggaatgatcctattatttctgtctacagtcctca |
8665296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9337006 - 9337229
Alignment:
| Q |
1 |
cttgataagaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggatggaatgtcgaaactccttatatccaaggctaataatt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || || | |||||||| | ||||||||||||||||||||||| |
|
|
| T |
9337006 |
cttgataagaataacaaagagaaagaaatagatgttcttgagggtcatctggaggatctagagagcatgtcgaagcaccttatatccaaggctaataatt |
9337105 |
T |
|
| Q |
101 |
ttatttttcttggataagattttaagtgatgtcttgcttttgaaagtgctgaatgcagacctttagttttattatcattatctaatagcattgttgttta |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9337106 |
ttatttttcttggataagatttaaagtgatgtcttgcttttgaaattgctgaatgcagacctttagttttattatcattatctaatagcattgaagttta |
9337205 |
T |
|
| Q |
201 |
tgttaatgtttgtgtttcacatgt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9337206 |
tgttaatgtttgtgtttcacatgt |
9337229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 246 - 397
Target Start/End: Original strand, 9337538 - 9337689
Alignment:
| Q |
246 |
ggtgtcgaacaataacacgtttcagacattagacatgccttctatttcaaggaagtataatgatccaattactcagaattatctaatgttatggccctct |
345 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| || | |||||| |||| |||||||||| ||||||| |||||||||||||||||| | |
|
|
| T |
9337538 |
ggtgtcgaacaataacatatttcagacattggacatgccttcgatgttaaggaactatagcgatccaattattcagaatgatctaatgttatggcccttt |
9337637 |
T |
|
| Q |
346 |
aagctcattcagagtgatccaataatttctgtctacggtcctcataaagatt |
397 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
9337638 |
aagctcattcataatgatccaattatttctgtcttcggtcctcataaagatt |
9337689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 29214706 - 29214922
Alignment:
| Q |
1 |
cttgataagaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggatggaatgtcgaaactccttatatccaaggctaataatt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| ||||| |||| ||||||||||| | |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
29214706 |
cttgataagaataacaaagagaaataaatagatgttctttagggtcatctcgaggagctggagagcatgtcgaaacaccttatatccaagactaataatt |
29214805 |
T |
|
| Q |
101 |
ttatttttcttggataagattttaagtgatgtcttgcttttgaaagtgctgaatgc-agacctttagttttattatcattatctaatagcattgttgttt |
199 |
Q |
| |
|
||||||| ||| | |||||||| |||||||| ||||||||||||| |||||||||| | ||||||| ||||||||||||| |||| |||||| | | || |
|
|
| T |
29214806 |
ttattttcctttgttaagatttaaagtgatgccttgcttttgaaattgctgaatgcaaaacctttaattttattatcattgtctagtagcatcgaaggtt |
29214905 |
T |
|
| Q |
200 |
atgttaatgtttgtgtt |
216 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
29214906 |
atgataatgtttgtgtt |
29214922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 29464904 - 29464820
Alignment:
| Q |
1 |
cttgataagaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggatggaatgtcgaaactccttatat |
85 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
29464904 |
cttgataagaataacaaaaagaaagaaacagatgttcttgagggtcatctggaggagctggagagcatgtcgaaacaccttatat |
29464820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4679666 - 4679727
Alignment:
| Q |
1 |
cttgataagaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctgga |
62 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||| | ||||| ||||| |||| |
|
|
| T |
4679666 |
cttgataagaataacgaacagaaagaaatagatgttcttgaggatcatctgaaggagttgga |
4679727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University