View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1496_low_4 (Length: 459)
Name: NF1496_low_4
Description: NF1496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1496_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 20 - 445
Target Start/End: Complemental strand, 45251324 - 45250899
Alignment:
| Q |
20 |
catctgtaagatatcattgccatcgttttttctctagttgttttggtcctaaaatatcttcgaatgcttttttacttgacaatatgtctattacaaacaa |
119 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45251324 |
catctgtaagatatcattgccatagttttttctctagttgttttggtcctaaaatatcttcgaatgcttttttacttgacaatatgtctattacaaacaa |
45251225 |
T |
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| Q |
120 |
tatgttgtttaatttgtcttgttacgatatcatgataatttctcatatatttgtaactgagctacattgtggtcacaactactcataactgcactattgg |
219 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45251224 |
tatgttgtttaatttgtcttgttacgatatcacgataatttctcatatatttgtaactgagctacattgtggtcacaactactcataactgcactattgg |
45251125 |
T |
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| Q |
220 |
cttcatctgagttcaaaaaggattaagtagaggccgtgcacgtggttatataaagttacataagcatcgacttgttctttaacaaaaatatttgtcaaca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45251124 |
cttcatctgagttcaaaaaggattaagtagaggccgtgcacgtggttatataaagttacataagcatcgacttgttctttaacaaaaatatttgtcaaca |
45251025 |
T |
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| Q |
320 |
tggcatcatttttataatcctttttctttgtgtatgcattcatttttgtttacaacataactgatttctgctaaagcccttctttgtctgctgatcagat |
419 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45251024 |
tggcatcatttttataatcccttttctttgtgtatgcattcatttttgtttacaacataactgatttctgctaaagcccttctttgtctgctgatcagat |
45250925 |
T |
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| Q |
420 |
gatcctatcatttgagcttccctttg |
445 |
Q |
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| T |
45250924 |
gatcctatcatttgagcttccctttg |
45250899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 42290332 - 42290428
Alignment:
| Q |
349 |
gtgtatgcattcatttttgtttacaacataactgatttctgctaaagcccttctttgtctgctgatcagatgatcctatcatttgagcttccctttg |
445 |
Q |
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||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
42290332 |
gtgtatgcattcatttttgtttagaacagaactgatttatgctaaagcccttctttgtttgctgataagatgatcctatcatttgagcttccctttg |
42290428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 42290010 - 42290168
Alignment:
| Q |
20 |
catctgtaagatatcattgccatcgttttttctctagttgttttggtcctaaaatatcttcgaatgcttttttacttgacaatatgt--ctattacaaac |
117 |
Q |
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||||||||| ||||| |||||||| |||| || ||||||||| |||||||||||||||| ||||| |||| |||||| ||||||| | ||| |||| |
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| T |
42290010 |
catctgtaaaatatccttgccatcaattttaatcgagttgttttagtcctaaaatatcttctaatgc-ttttcacttgagaatatgtacatgttataaac |
42290108 |
T |
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| Q |
118 |
aatatgttgtttaatttgtcttgttacgatatcatgataatttctcatatatttgtaact |
177 |
Q |
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|||| |||||||| || || ||||| ||||||||| | |||||| |||||||| |||| |
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| T |
42290109 |
aatacattgtttaaattttcatgttatgatatcatggaagtttctcgtatatttgcaact |
42290168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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