View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1496_low_5 (Length: 440)
Name: NF1496_low_5
Description: NF1496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1496_low_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 440
Target Start/End: Original strand, 25264421 - 25264844
Alignment:
| Q |
14 |
aggttggtgatgcgaatgatgacaaagtgagcgaatggttgcactggactatacaccatcacgatgtacctacttttcttggtgggcaccactctttgag |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25264421 |
aggttggtgatgcgaatgacgacaaagtgagcgcatggttgcactggactatacaccatcacgatgtacctacttttcttggtgggcacctctctttgag |
25264520 |
T |
|
| Q |
114 |
aaataagagcgccaagtatgttgatttgttgtacttggagtattttcgagatctagagatggtgtatatgacttctctcgggagggcgactatcctaacc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25264521 |
aaataagagcgccaagtatgttgatttgttgtacttggagtattttcgagatctagagatggtgtatatgacttctctcgggagggcgacta-cctaacc |
25264619 |
T |
|
| Q |
214 |
tacttataccgagagctaaataatgtgtgttagtataggacgaagcaattggaattggttacatgacgctacatgagataaaataaacacacaatatctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25264620 |
tacttataccgagagctaaataatgtgtgttagtataggacgaagcaattgg--ttggttacatgacactacatgagataaaataaacacacaatatctt |
25264717 |
T |
|
| Q |
314 |
aattaattgtacaaaatgttaaatttgatgttatttactaattagtatatattgatgcagttaagaatatattagcatgctcagggtgccggtggtcgag |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
25264718 |
aattaattgtacaaaatgttaaatttgatgttatttactaattagtatatattgatgcagttaagaatatattagcacgctcaaggtgccggtggtcggg |
25264817 |
T |
|
| Q |
414 |
attatgaacctgcatactaagagggtc |
440 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
25264818 |
attatgaacctgcatactaagagggtc |
25264844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University