View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1496_low_7 (Length: 385)

Name: NF1496_low_7
Description: NF1496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1496_low_7
NF1496_low_7
[»] chr5 (29 HSPs)
chr5 (7-293)||(11039552-11039831)
chr5 (294-340)||(2953292-2953338)
chr5 (294-339)||(16971247-16971292)
chr5 (293-329)||(19598435-19598471)
chr5 (301-340)||(19655155-19655194)
chr5 (297-339)||(19655261-19655303)
chr5 (294-339)||(291200-291245)
chr5 (294-339)||(2093927-2093972)
chr5 (294-339)||(13312254-13312299)
chr5 (303-344)||(39777050-39777091)
chr5 (295-339)||(3899942-3899986)
chr5 (301-341)||(19598329-19598369)
chr5 (294-330)||(28818916-28818952)
chr5 (300-340)||(29699469-29699509)
chr5 (301-340)||(291094-291133)
chr5 (294-340)||(2356373-2356419)
chr5 (294-332)||(3180059-3180097)
chr5 (334-368)||(3180143-3180177)
chr5 (293-331)||(26662397-26662435)
chr5 (293-331)||(26933992-26934030)
chr5 (297-339)||(32485652-32485694)
chr5 (301-330)||(2953204-2953233)
chr5 (301-330)||(3899845-3899874)
chr5 (332-368)||(291116-291152)
chr5 (332-368)||(19655177-19655213)
chr5 (303-339)||(22082997-22083033)
chr5 (297-341)||(26662501-26662545)
chr5 (297-341)||(26934096-26934140)
chr5 (332-368)||(29699386-29699422)
[»] chr3 (17 HSPs)
chr3 (294-340)||(1801436-1801482)
chr3 (294-340)||(41753066-41753112)
chr3 (297-341)||(33689169-33689213)
chr3 (301-340)||(41752961-41753000)
chr3 (294-340)||(30734504-30734550)
chr3 (293-330)||(1272561-1272598)
chr3 (303-340)||(43139811-43139848)
chr3 (294-339)||(45103099-45103144)
chr3 (294-330)||(49414526-49414562)
chr3 (297-336)||(35538960-35538999)
chr3 (301-340)||(51046175-51046214)
chr3 (301-339)||(30734399-30734437)
chr3 (301-330)||(1801598-1801627)
chr3 (293-330)||(33689279-33689316)
chr3 (297-330)||(50524814-50524847)
chr3 (332-368)||(41752983-41753019)
chr3 (300-332)||(47677356-47677388)
[»] scaffold0016 (1 HSPs)
scaffold0016 (294-339)||(49693-49738)
[»] chr4 (31 HSPs)
chr4 (297-341)||(5048901-5048945)
chr4 (293-339)||(42375113-42375159)
chr4 (297-338)||(25617974-25618015)
chr4 (296-340)||(3862648-3862692)
chr4 (296-340)||(3871405-3871449)
chr4 (300-340)||(26186116-26186156)
chr4 (301-340)||(51265442-51265481)
chr4 (297-339)||(2325083-2325125)
chr4 (303-340)||(23444371-23444408)
chr4 (294-331)||(31430460-31430497)
chr4 (294-339)||(47661945-47661990)
chr4 (294-339)||(51265548-51265593)
chr4 (292-340)||(6271804-6271852)
chr4 (300-340)||(30710002-30710042)
chr4 (294-330)||(47404584-47404620)
chr4 (294-330)||(50384104-50384140)
chr4 (301-340)||(6271699-6271738)
chr4 (300-331)||(24006164-24006195)
chr4 (294-340)||(35682156-35682202)
chr4 (296-330)||(52028550-52028584)
chr4 (294-339)||(23444259-23444304)
chr4 (301-330)||(31430561-31430590)
chr4 (301-330)||(42375016-42375045)
chr4 (301-330)||(47404688-47404717)
chr4 (294-339)||(53954713-53954758)
chr4 (332-368)||(3862629-3862665)
chr4 (332-368)||(3871386-3871422)
chr4 (332-368)||(23444352-23444388)
chr4 (294-330)||(24006069-24006105)
chr4 (332-368)||(47661861-47661897)
chr4 (332-368)||(51265464-51265500)
[»] chr2 (19 HSPs)
chr2 (297-339)||(45213903-45213945)
chr2 (294-339)||(29508680-29508725)
chr2 (294-330)||(2893962-2893998)
chr2 (301-340)||(16514421-16514460)
chr2 (302-340)||(6217222-6217260)
chr2 (294-340)||(38933689-38933735)
chr2 (294-339)||(16514527-16514572)
chr2 (294-330)||(9172980-9173016)
chr2 (297-341)||(32545779-32545823)
chr2 (300-339)||(14470588-14470627)
chr2 (301-340)||(29508793-29508832)
chr2 (292-330)||(14229455-14229493)
chr2 (301-330)||(6217327-6217356)
chr2 (294-339)||(14892363-14892408)
chr2 (301-338)||(37632988-37633025)
chr2 (294-339)||(37961809-37961854)
chr2 (332-368)||(6217243-6217279)
chr2 (332-368)||(14229372-14229408)
chr2 (300-340)||(32545890-32545930)
[»] chr8 (19 HSPs)
chr8 (294-339)||(5033264-5033309)
chr8 (294-339)||(33841581-33841626)
chr8 (294-341)||(5667087-5667134)
chr8 (301-340)||(35441071-35441110)
chr8 (301-339)||(5033158-5033196)
chr8 (301-339)||(33841694-33841732)
chr8 (294-339)||(35440959-35441004)
chr8 (294-343)||(43844461-43844510)
chr8 (294-339)||(45191117-45191162)
chr8 (292-332)||(8243385-8243425)
chr8 (301-341)||(8243489-8243529)
chr8 (301-340)||(2581822-2581861)
chr8 (301-340)||(22649842-22649881)
chr8 (330-368)||(5667114-5667152)
chr8 (294-331)||(6296604-6296641)
chr8 (332-368)||(8243471-8243507)
chr8 (301-341)||(10086754-10086794)
chr8 (294-330)||(34541802-34541838)
chr8 (332-368)||(35441052-35441088)
[»] chr7 (23 HSPs)
chr7 (294-339)||(11016972-11017017)
chr7 (294-331)||(45231853-45231890)
chr7 (294-339)||(48000840-48000885)
chr7 (301-341)||(34854796-34854836)
chr7 (301-340)||(11016866-11016905)
chr7 (301-340)||(45231952-45231991)
chr7 (294-340)||(4290647-4290693)
chr7 (301-339)||(41018331-41018369)
chr7 (294-340)||(42628397-42628443)
chr7 (294-339)||(38975908-38975953)
chr7 (332-368)||(34854778-34854814)
chr7 (301-341)||(38975802-38975842)
chr7 (332-368)||(38975824-38975860)
chr7 (295-330)||(34854695-34854730)
chr7 (301-339)||(48000691-48000729)
chr7 (301-330)||(29053417-29053446)
chr7 (301-341)||(4290542-4290582)
chr7 (294-330)||(10419561-10419597)
chr7 (332-368)||(11016888-11016924)
chr7 (294-330)||(29053313-29053349)
chr7 (294-330)||(41018227-41018263)
chr7 (303-331)||(42628303-42628331)
chr7 (332-368)||(48000713-48000749)
[»] chr1 (25 HSPs)
chr1 (294-339)||(5995472-5995517)
chr1 (294-339)||(48993907-48993952)
chr1 (301-340)||(29179699-29179738)
chr1 (297-340)||(31342256-31342299)
chr1 (301-340)||(46931994-46932033)
chr1 (292-339)||(46932085-46932131)
chr1 (294-337)||(49444903-49444946)
chr1 (301-339)||(48994020-48994058)
chr1 (303-340)||(44706886-44706923)
chr1 (328-368)||(5995384-5995424)
chr1 (292-340)||(15220913-15220961)
chr1 (301-341)||(48498412-48498452)
chr1 (294-330)||(48823884-48823920)
chr1 (301-340)||(37155043-37155082)
chr1 (297-335)||(1091651-1091689)
chr1 (301-331)||(8337953-8337983)
chr1 (294-336)||(29179587-29179629)
chr1 (301-339)||(36290510-36290548)
chr1 (298-339)||(9157304-9157345)
chr1 (301-330)||(49445014-49445043)
chr1 (332-368)||(29179680-29179716)
chr1 (295-339)||(32540851-32540895)
chr1 (294-330)||(44183438-44183474)
chr1 (294-330)||(46333945-46333981)
chr1 (332-368)||(46932016-46932052)
[»] chr6 (11 HSPs)
chr6 (292-340)||(17751004-17751052)
chr6 (294-339)||(24618591-24618636)
chr6 (294-330)||(551164-551200)
chr6 (328-368)||(17750917-17750957)
chr6 (293-341)||(24587450-24587498)
chr6 (301-341)||(24975749-24975789)
chr6 (332-368)||(24975771-24975807)
chr6 (303-368)||(13043447-13043512)
chr6 (301-329)||(12343106-12343134)
chr6 (303-331)||(13766746-13766774)
chr6 (294-330)||(31654304-31654340)
[»] scaffold0047 (1 HSPs)
scaffold0047 (301-330)||(63763-63792)
[»] scaffold0180 (1 HSPs)
scaffold0180 (307-339)||(19125-19157)
[»] scaffold0161 (1 HSPs)
scaffold0161 (301-329)||(27217-27245)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 11039831 - 11039552
Alignment:
Q  7 cagaacctgtgtagaatatggcaagagaaacaatagatttcataccgattttaatctgcgatatattgggattcaataagagaggattataaaaaatgtt 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||    
T  11039831 cagaacctatgtagaatatggcaagagaaacaatagatttcataccgattttaatctgcgatatattgggattcaataagagaggattgtttaaaatgtt 11039732  T
Q  107 tgaacctatgttgttgaatatagcagaagaacttgttacttgaatatgtgatatatgatctttaccattaaaatttataggattccacaacttaaaaaat 206  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  11039731 tgaacctatgttgttgaatatagcagaagaacttg-------aatatgtgatatatgatctttacccttaaaatttataggattacacaacttaaaaaat 11039639  T
Q  207 gtataaatgcgttttgatggtgagatcactaacataatcattcatgttaaattccaattggagaggattcaaatctaatacatacca 293  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11039638 gtataaatgcgttttaatggtgagatcactaacataatcattcatgttaaattccaattggagaggattcaaatctaatacatacca 11039552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 2953338 - 2953292
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  2953338 gggtagcacttgggtgacatagagttgggtgacattggtgacattgg 2953292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 16971292 - 16971247
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  16971292 gggtagcacttgggtgacatagagttgggtgacattggtgacattg 16971247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 19598471 - 19598435
Alignment:
Q  293 agggtaacacttgggtgacatagagttgggtgacatt 329  Q
    |||||||||||||||||||||||||||||||||||||    
T  19598471 agggtaacacttgggtgacatagagttgggtgacatt 19598435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 19655155 - 19655194
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  19655155 acttgggtgacatagagttgggtgacattggtgacattgg 19655194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 19655303 - 19655261
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  19655303 taacacttgggtgacatagagttgagtgacattggtgacattg 19655261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 291245 - 291200
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| ||||||||||| ||||||||||||||||||| ||||||||    
T  291245 gggtagcacttgggtgatatagagttgggtgacattggtgacattg 291200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 2093927 - 2093972
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||    
T  2093927 gggtagcacttgggtgacatagagttgggtgatattggtgacattg 2093972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 13312254 - 13312299
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||||    
T  13312254 gggtagcacttaggtgacatagagttaggtgacattgatgacattg 13312299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 39777050 - 39777091
Alignment:
Q  303 ttgggtgacatagagttgggtgacattgatgacattggttac 344  Q
    |||||||||||||||||||||||||||| |||||||| ||||    
T  39777050 ttgggtgacatagagttgggtgacattggtgacattgattac 39777091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 3899986 - 3899942
Alignment:
Q  295 ggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||| |||||||||||| |||||||||||||||||| ||||||||    
T  3899986 ggtagcacttgggtgacttagagttgggtgacattggtgacattg 3899942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 19598329 - 19598369
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  19598329 acttgggtgacatagagttgggtaacattggtgacattggt 19598369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 28818916 - 28818952
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||| |||||||||||||||||||||||||||||||    
T  28818916 gggtagcacttgggtgacatagagttgggtgacattg 28818952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 29699509 - 29699469
Alignment:
Q  300 cacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  29699509 cacttgggtgacatagagttgggtgatattggtgacattgg 29699469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 291094 - 291133
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  291094 acttgagtgacatagagttgggtgacattggtgacattgg 291133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 2356419 - 2356373
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||| |||||| ||||||||||||||| |||||||| |||||||||    
T  2356419 gggtagcacttgtgtgacatagagttggatgacattggtgacattgg 2356373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 3180059 - 3180097
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgat 332  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  3180059 gggtagcacttgtgtgacatagagttgggtgacattgat 3180097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 368
Target Start/End: Complemental strand, 3180177 - 3180143
Alignment:
Q  334 acattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||| ||||||||||||||||||||||||||    
T  3180177 acattggtgacattggtcaatcacaatgccacaat 3180143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 26662397 - 26662435
Alignment:
Q  293 agggtaacacttgggtgacatagagttgggtgacattga 331  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  26662397 agggtagcacttgtgtgacatagagttgggtgacattga 26662435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 26933992 - 26934030
Alignment:
Q  293 agggtaacacttgggtgacatagagttgggtgacattga 331  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  26933992 agggtagcacttgtgtgacatagagttgggtgacattga 26934030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 32485694 - 32485652
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||    
T  32485694 taacacttgtgtgacacagagttgggtgacattggtgacattg 32485652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 2953204 - 2953233
Alignment:
Q  301 acttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||||||||||||||||||    
T  2953204 acttgggtgacatagagttgggtgacattg 2953233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 3899845 - 3899874
Alignment:
Q  301 acttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||||||||||||||||||    
T  3899845 acttgggtgacatagagttgggtgacattg 3899874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 291116 - 291152
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  291116 tgacattggtgacattggccaatcacaatgccacaat 291152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 19655177 - 19655213
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  19655177 tgacattggtgacattggccaatcacaatgccacaat 19655213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 22082997 - 22083033
Alignment:
Q  303 ttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||||||||||||| |||||||| |||||||||    
T  22082997 ttgggtgacatagagttgtgtgacattaatgacattg 22083033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 26662545 - 26662501
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    ||||||||| ||||| ||||||||||||| |||| ||||||||||    
T  26662545 taacacttgtgtgacttagagttgggtgatattggtgacattggt 26662501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 26934140 - 26934096
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    ||||||||| ||||| ||||||||||||| |||| ||||||||||    
T  26934140 taacacttgtgtgacttagagttgggtgatattggtgacattggt 26934096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 29699386 - 29699422
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  29699386 tgacattggtgacattggccaatcacaatgccacaat 29699422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 1801436 - 1801482
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  1801436 gggtaacacttgggtgacatagagttgggtgacattggtgacattgg 1801482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 41753112 - 41753066
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  41753112 gggtaacacttgggtgacatagagttgagtgacattggtgacattgg 41753066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 33689169 - 33689213
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  33689169 taacacttgtgtgacatagagttgggtgacattgatgatattggt 33689213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 41752961 - 41753000
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  41752961 acttgggtgacatagagttgggtgacattggtgacattgg 41753000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 30734550 - 30734504
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||    
T  30734550 gggtagcacttgggtgacatagagttaggtgacattggtgacattgg 30734504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 1272598 - 1272561
Alignment:
Q  293 agggtaacacttgggtgacatagagttgggtgacattg 330  Q
    |||||| |||||||||||||||||||||||||||||||    
T  1272598 agggtagcacttgggtgacatagagttgggtgacattg 1272561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 43139848 - 43139811
Alignment:
Q  303 ttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||| |||||||||    
T  43139848 ttgggtgacatagagttgggtgacattggtgacattgg 43139811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 45103099 - 45103144
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| ||||||||||||||||||||||||||||||| ||| ||||    
T  45103099 gggtagcacttgggtgacatagagttgggtgacattggtgatattg 45103144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 49414562 - 49414526
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||| |||||||||||||||||||||||||||||||    
T  49414562 gggtagcacttgggtgacatagagttgggtgacattg 49414526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 35538999 - 35538960
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgaca 336  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  35538999 taacacttggatgacatagagttgggtgacattggtgaca 35538960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 51046214 - 51046175
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  51046214 acttgggtgacatagagttggatgacattggtgacattgg 51046175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 30734399 - 30734437
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  30734399 acttgtgtgacatagagtttggtgacattgatgacattg 30734437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 1801627 - 1801598
Alignment:
Q  301 acttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||||||||||||||||||    
T  1801627 acttgggtgacatagagttgggtgacattg 1801598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 33689316 - 33689279
Alignment:
Q  293 agggtaacacttgggtgacatagagttgggtgacattg 330  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  33689316 agggtagcacttgggtgacattgagttgggtgacattg 33689279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 50524847 - 50524814
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattg 330  Q
    |||||||||||||||||||||||| |||||||||    
T  50524847 taacacttgggtgacatagagttgagtgacattg 50524814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 41752983 - 41753019
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  41752983 tgacattggtgacattggccaatcacaatgccacaat 41753019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 47677388 - 47677356
Alignment:
Q  300 cacttgggtgacatagagttgggtgacattgat 332  Q
    |||||| ||||||||||||||||||||||||||    
T  47677388 cacttgtgtgacatagagttgggtgacattgat 47677356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 49693 - 49738
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  49693 gggtagcacttgggtgacatagagttgggtgacattgatgacattg 49738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 5048945 - 5048901
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  5048945 taacacttggatgacatagagttgggtgacattgatgacattggt 5048901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 42375159 - 42375113
Alignment:
Q  293 agggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  42375159 agggtagcacttgggtgacatagagttgggtgacattggtgacattg 42375113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 25617974 - 25618015
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgacatt 338  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  25617974 taacacttgtgtgacatagagttgggtgacattgatgacatt 25618015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 3862692 - 3862648
Alignment:
Q  296 gtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  3862692 gtaacacttaggtgacatagagttgggtgacattggtgacattgg 3862648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 3871449 - 3871405
Alignment:
Q  296 gtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  3871449 gtaacacttaggtgacatagagttgggtgacattggtgacattgg 3871405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 26186156 - 26186116
Alignment:
Q  300 cacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  26186156 cacttgggtgacatagagttgggtaacattgatgacattgg 26186116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 51265442 - 51265481
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  51265442 acttgggtgacatagagttgggtgacattggtgacattgg 51265481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 2325125 - 2325083
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||||||| ||||||||||||| |||||||||||||||||||    
T  2325125 taacacttgagtgacatagagtttggtgacattgatgacattg 2325083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 23444408 - 23444371
Alignment:
Q  303 ttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||| |||||||||    
T  23444408 ttgggtgacatagagttgggtgacattggtgacattgg 23444371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 31430460 - 31430497
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattga 331  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  31430460 gggtagcacttgggtgacatagagttgggtgacattga 31430497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 47661990 - 47661945
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||    
T  47661990 gggtagcatttgggtgacatagagttgggtgacattggtgacattg 47661945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 51265593 - 51265548
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||||    
T  51265593 gggtagcacttgggtgacttagagttgggtgacattggtgacattg 51265548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 6271852 - 6271804
Alignment:
Q  292 cagggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||| ||||||||||||||||||||| |||| |||| |||||||||    
T  6271852 cagggtagcacttgggtgacatagagttgagtgatattggtgacattgg 6271804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 30710042 - 30710002
Alignment:
Q  300 cacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  30710042 cacttgggtgacatagagttaggtgacattggtgacattgg 30710002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 47404584 - 47404620
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||| |||||||||||||||||||||||||||||||    
T  47404584 gggtagcacttgggtgacatagagttgggtgacattg 47404620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 50384104 - 50384140
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||| |||||||||||||||||||||||||||||||    
T  50384104 gggtagcacttgggtgacatagagttgggtgacattg 50384140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 6271699 - 6271738
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  6271699 acttgggtgacatagagttgggtgatattggtgacattgg 6271738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 331
Target Start/End: Complemental strand, 24006195 - 24006164
Alignment:
Q  300 cacttgggtgacatagagttgggtgacattga 331  Q
    ||||||||||||||||||||||||||||||||    
T  24006195 cacttgggtgacatagagttgggtgacattga 24006164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 35682156 - 35682202
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||| |||||||||||||||||||| ||||| |||| |||||||||    
T  35682156 gggtagcacttgggtgacatagagttaggtgatattggtgacattgg 35682202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 52028550 - 52028584
Alignment:
Q  296 gtaacacttgggtgacatagagttgggtgacattg 330  Q
    |||||||||||||||||||||||||||||| ||||    
T  52028550 gtaacacttgggtgacatagagttgggtgatattg 52028584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 23444259 - 23444304
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| || |||||| ||||||||||||||||||||| ||||||||    
T  23444259 gggtagcatttgggtaacatagagttgggtgacattggtgacattg 23444304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 31430590 - 31430561
Alignment:
Q  301 acttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||||||||||||||||||    
T  31430590 acttgggtgacatagagttgggtgacattg 31430561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 42375016 - 42375045
Alignment:
Q  301 acttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||||||||||||||||||    
T  42375016 acttgggtgacatagagttgggtgacattg 42375045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 47404717 - 47404688
Alignment:
Q  301 acttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||||||||||||||||||    
T  47404717 acttgggtgacatagagttgggtgacattg 47404688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 53954758 - 53954713
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| |||||  |||||||||||||||||||||||| ||||||||    
T  53954758 gggtagcacttttgtgacatagagttgggtgacattggtgacattg 53954713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 3862665 - 3862629
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  3862665 tgacattggtgacattggccaatcacaatgccacaat 3862629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 3871422 - 3871386
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  3871422 tgacattggtgacattggccaatcacaatgccacaat 3871386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 23444388 - 23444352
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  23444388 tgacattggtgacattggccaatcacaatgccacaat 23444352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 24006069 - 24006105
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  24006069 gggtagcacttgggtgacatacagttgggtgacattg 24006105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 47661861 - 47661897
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  47661861 tgacattggtgacattggccaatcacaatgccacaat 47661897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 51265464 - 51265500
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  51265464 tgacattggtgacattggccaatcacaatgccacaat 51265500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 45213945 - 45213903
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  45213945 taacacttgtgtgacatagagttgggtgacattgatgacattg 45213903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 29508680 - 29508725
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  29508680 gggtaacacttaggtgacatagagttgggtgacattggtgacattg 29508725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 2893962 - 2893998
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    |||||||||||||||||||||||||||||||||||||    
T  2893962 gggtaacacttgggtgacatagagttgggtgacattg 2893998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 16514421 - 16514460
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  16514421 acttgggtgacatagagttgggtgacattggtgacattgg 16514460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 6217222 - 6217260
Alignment:
Q  302 cttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  6217222 cttgggtgacatagagttgggtgacattggtgacattgg 6217260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 38933735 - 38933689
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  38933735 gggtagcacttgggtgacatagagttgggtgacattggtgacgttgg 38933689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 16514572 - 16514527
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||    
T  16514572 gggtagcacttgggtgacatagagttgggtgagattggtgacattg 16514527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 9172980 - 9173016
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    |||||| ||||||||||||||||||||||||||||||    
T  9172980 gggtaatacttgggtgacatagagttgggtgacattg 9173016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 32545779 - 32545823
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||    
T  32545779 taacacttaggtgacatagagttaggtgacattggtgacattggt 32545823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 14470588 - 14470627
Alignment:
Q  300 cacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  14470588 cacttgtgtgacatagagttgggtgacattggtgacattg 14470627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 29508832 - 29508793
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  29508832 acttgggtgacatagagttgggtgatattggtgacattgg 29508793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 14229493 - 14229455
Alignment:
Q  292 cagggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  14229493 cagggtagcacttgggtgacatagagttggatgacattg 14229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 6217356 - 6217327
Alignment:
Q  301 acttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||||||||||||||||||    
T  6217356 acttgggtgacatagagttgggtgacattg 6217327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 14892408 - 14892363
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| || ||||||||||||||||||| |||||||| ||||||||    
T  14892408 gggtagcatttgggtgacatagagttggatgacattggtgacattg 14892363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 37632988 - 37633025
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacatt 338  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  37632988 acttgggtgacatagagtttggtgacattggtgacatt 37633025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 37961854 - 37961809
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||||||||||||||||||||||||| |||| |||  ||||||||    
T  37961854 gggtaacacttgggtgacatagagttgagtgatatttgtgacattg 37961809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 6217243 - 6217279
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  6217243 tgacattggtgacattggccaatcacaatgccacaat 6217279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 14229372 - 14229408
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  14229372 tgacattggtgacattggtcaatcacaatgtcacaat 14229408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 32545930 - 32545890
Alignment:
Q  300 cacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||||||||||||||||  ||||||||| |||||||||    
T  32545930 cacttgggtgacatagagtttagtgacattggtgacattgg 32545890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 5033309 - 5033264
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  5033309 gggtagcacttgggtgacatagagttgggtgacattggtgacattg 5033264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 33841581 - 33841626
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  33841581 gggtagcacttgggtgacatagagttgggtgacattggtgacattg 33841626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 5667087 - 5667134
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    ||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  5667087 gggtagcacttgggtgacatagagttggatgacattggtgacattggt 5667134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 35441110 - 35441071
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  35441110 acttgggtgacatagagttgggtgacattggtgacattgg 35441071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 5033158 - 5033196
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  5033158 acttgggtgacatagagttgggtgacattggtgacattg 5033196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 33841732 - 33841694
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  33841732 acttgggtgacatagagttgggtgacattggtgacattg 33841694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 35440959 - 35441004
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||||    
T  35440959 gggtagcacttgggtgacttagagttgggtgacattggtgacattg 35441004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 43844461 - 43844510
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattggtta 343  Q
    |||||||| |||| |||||||||||||||||| |||||||| ||||||||    
T  43844461 gggtaacatttggatgacatagagttgggtgatattgatgatattggtta 43844510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 45191117 - 45191162
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||    
T  45191117 gggtaacacttgggtgacatagagttggatgatattggtgacattg 45191162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 8243385 - 8243425
Alignment:
Q  292 cagggtaacacttgggtgacatagagttgggtgacattgat 332  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  8243385 cagggtagcacttgggtgacatagagttgagtgacattgat 8243425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 8243529 - 8243489
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  8243529 acttgggtgacatagagttgggtgacattggtgacgttggt 8243489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 2581822 - 2581861
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  2581822 acttgggtgacatagaattgggtgacattgttgacattgg 2581861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 22649842 - 22649881
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  22649842 acttgggtgacatagagttgagtgacattggtgacattgg 22649881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 5667114 - 5667152
Alignment:
Q  330 gatgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  5667114 gatgacattggtgacattggtcaatcacaatgtcacaat 5667152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 6296604 - 6296641
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattga 331  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  6296604 gggtagcacttggatgacatagagttgggtgacattga 6296641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 8243507 - 8243471
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| || |||||||||||||||||||||||    
T  8243507 tgacattggtgacgttggtcaatcacaatgccacaat 8243471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 10086754 - 10086794
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    |||||||||||||||| ||||||||||||  ||||||||||    
T  10086754 acttgggtgacatagaattgggtgacattagtgacattggt 10086794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 34541802 - 34541838
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  34541802 gggtagcacttgggtgacataaagttgggtgacattg 34541838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 35441088 - 35441052
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  35441088 tgacattggtgacattggccaatcacaatgccacaat 35441052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 11017017 - 11016972
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  11017017 gggtagcacttgggtgacatagagttgggtgacattggtgacattg 11016972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 45231853 - 45231890
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattga 331  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45231853 gggtaacacttgggtgacatagagttgggtgacattga 45231890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 48000885 - 48000840
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  48000885 gggtaacacttgggtcacatagagttgggtgacattggtgacattg 48000840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 34854836 - 34854796
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  34854836 acttgggtgacatagagttgggtgacattggtgacattggt 34854796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 11016866 - 11016905
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  11016866 acttgggtgacatagagttgggtgacattggtgacattgg 11016905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 45231991 - 45231952
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  45231991 acttgggtgacatagagttgggtgacattggtgacattgg 45231952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 4290693 - 4290647
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||| ||||||||||||||| ||||||||||||||| |||||||||    
T  4290693 gggtagcacttgggtgacatacagttgggtgacattggtgacattgg 4290647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 41018369 - 41018331
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  41018369 acttgggtgacatagagttgggtgacattggtgacattg 41018331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 42628443 - 42628397
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||| ||||||||||||||||||||||||||||||| ||| |||||    
T  42628443 gggtagcacttgggtgacatagagttgggtgacattggtgatattgg 42628397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 38975953 - 38975908
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||    
T  38975953 gggtaacacttaggtgacatagagttaggtgacattggtgacattg 38975908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 34854814 - 34854778
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||||||||||||||||||||||    
T  34854814 tgacattggtgacattggtcaatcacaatgccacaat 34854778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 38975802 - 38975842
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  38975802 acttgggtgacatagagttgggtgacattggtaacattggt 38975842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 38975824 - 38975860
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||||||||||||||||||||||    
T  38975824 tgacattggtaacattggtcaatcacaatgccacaat 38975860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 330
Target Start/End: Original strand, 34854695 - 34854730
Alignment:
Q  295 ggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||||||||||||| ||||||||||    
T  34854695 ggtaacacttgggtgacatagagtttggtgacattg 34854730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 48000691 - 48000729
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  48000691 acttgggtgacattgagttgggtgacattggtgacattg 48000729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 29053446 - 29053417
Alignment:
Q  301 acttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||||||||||||||||||    
T  29053446 acttgggtgacatagagttgggtgacattg 29053417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 4290542 - 4290582
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    ||||||||||||||||||||||||| |||| ||| ||||||    
T  4290542 acttgggtgacatagagttgggtgatattggtgatattggt 4290582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 10419597 - 10419561
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  10419597 gggtaacacttgggtaacatagagtttggtgacattg 10419561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 11016888 - 11016924
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  11016888 tgacattggtgacattggccaatcacaatgccacaat 11016924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 29053313 - 29053349
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  29053313 gggtaacatttgggtgacatagagtttggtgacattg 29053349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 41018227 - 41018263
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  41018227 gggtagcacttggatgacatagagttgggtgacattg 41018263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Original strand, 42628303 - 42628331
Alignment:
Q  303 ttgggtgacatagagttgggtgacattga 331  Q
    |||||||||||||||||||||||||||||    
T  42628303 ttgggtgacatagagttgggtgacattga 42628331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 48000713 - 48000749
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| |||||| |||||||||||||||||||    
T  48000713 tgacattggtgacattgatcaatcacaatgccacaat 48000749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 5995517 - 5995472
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||    
T  5995517 gggtaacacttgggtgacatagagttggatgacattggtgacattg 5995472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 48993907 - 48993952
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  48993907 gggtagcacttgggtgacatagagttgggtgacattggtgacattg 48993952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 29179738 - 29179699
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  29179738 acttgggtgacatagagttgggtgacattggtgacattgg 29179699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 31342256 - 31342299
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  31342256 taacacttgggtgacatagagttgggtgacaccgatgacattgg 31342299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 46931994 - 46932033
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  46931994 acttgggtgacatagagttgggtgacattggtgacattgg 46932033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 46932131 - 46932085
Alignment:
Q  292 cagggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  46932131 cagggtaacacttgggtgacatagagtt-ggtgacattggtgacattg 46932085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 49444903 - 49444946
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacat 337  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||    
T  49444903 gggtagcacttgggtgacatagagttgggtgacattggtgacat 49444946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 48994058 - 48994020
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  48994058 acttgggtgacatagagttgggtgacattggtgacattg 48994020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 44706923 - 44706886
Alignment:
Q  303 ttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    |||||||||||||||||||||||||||| |||||||||    
T  44706923 ttgggtgacatagagttgggtgacattggtgacattgg 44706886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 5995384 - 5995424
Alignment:
Q  328 ttgatgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  5995384 ttgatgacattggtaacattggccaatcacaatgccacaat 5995424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 15220961 - 15220913
Alignment:
Q  292 cagggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||| || |||||||||||||||||||||||||||| ||| |||||    
T  15220961 cagggtagcatttgggtgacatagagttgggtgacattggtgatattgg 15220913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 48498412 - 48498452
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  48498412 acttgggtgacatagagttgggtgacatttgtgacattggt 48498452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 48823884 - 48823920
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||| |||||||||||||||||||||||||||||||    
T  48823884 gggtagcacttgggtgacatagagttgggtgacattg 48823920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 37155043 - 37155082
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  37155043 acttgggtgacatagagtttggtgacattggtgacattgg 37155082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 1091689 - 1091651
Alignment:
Q  297 taacacttgggtgacatagagttgggtgacattgatgac 335  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  1091689 taacacttgggtgacatagagttgggtgatattggtgac 1091651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 331
Target Start/End: Complemental strand, 8337983 - 8337953
Alignment:
Q  301 acttgggtgacatagagttgggtgacattga 331  Q
    |||||||||||||||||||||||||||||||    
T  8337983 acttgggtgacatagagttgggtgacattga 8337953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 29179587 - 29179629
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgaca 336  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||    
T  29179587 gggtagcacttggatgacatagagttgggtgacattggtgaca 29179629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 36290548 - 36290510
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||||||||||||||||||||||||| || |||||    
T  36290548 acttgggtgacatagagttgggtgacattggtggcattg 36290510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 9157304 - 9157345
Alignment:
Q  298 aacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||| |||||||||||||||||||||||| | ||||||    
T  9157304 aacacttgtgtgacatagagttgggtgacattggtaacattg 9157345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 49445043 - 49445014
Alignment:
Q  301 acttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||||||||||||||||||    
T  49445043 acttgggtgacatagagttgggtgacattg 49445014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 29179716 - 29179680
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  29179716 tgacattggtgacattggccaatcacaatgccacaat 29179680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 32540895 - 32540851
Alignment:
Q  295 ggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    |||| ||||||||||||||||| |||| |||||||| ||||||||    
T  32540895 ggtagcacttgggtgacatagaattggatgacattggtgacattg 32540851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 44183474 - 44183438
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  44183474 gggtagcacttgggtgacatagagttaggtgacattg 44183438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 46333945 - 46333981
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  46333945 gggtagcacttgggtgacatagagttggatgacattg 46333981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 46932016 - 46932052
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  46932016 tgacattggtgacattggccaatcacaatgccacaat 46932052  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 17751052 - 17751004
Alignment:
Q  292 cagggtaacacttgggtgacatagagttgggtgacattgatgacattgg 340  Q
    ||||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  17751052 cagggtagcacttgtgtgacatagagttgggtgatattgatgacattgg 17751004  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 24618591 - 24618636
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattgatgacattg 339  Q
    ||||| |||||| |||||||||||||||||||||||| ||||||||    
T  24618591 gggtagcacttgagtgacatagagttgggtgacattggtgacattg 24618636  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 551164 - 551200
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    |||||||||||||||| ||||||||||||||||||||    
T  551164 gggtaacacttgggtggcatagagttgggtgacattg 551200  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 17750917 - 17750957
Alignment:
Q  328 ttgatgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  17750917 ttgatgacattggtgacattggtcaatcacaatgtcacaat 17750957  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 24587450 - 24587498
Alignment:
Q  293 agggtaacacttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    |||||| ||||| ||||||||||||||||||||||||  ||||||||||    
T  24587450 agggtagcacttaggtgacatagagttgggtgacattagtgacattggt 24587498  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 24975749 - 24975789
Alignment:
Q  301 acttgggtgacatagagttgggtgacattgatgacattggt 341  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  24975749 acttgggtgacatagagttggctgacattggtgacattggt 24975789  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 24975771 - 24975807
Alignment:
Q  332 tgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||| ||||||||||||||||||||||||||    
T  24975771 tgacattggtgacattggtcaatcacaatgccacaat 24975807  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 13043447 - 13043512
Alignment:
Q  303 ttgggtgacatagagttgggtgacattgatgacattggttacattggtcaatcacaatgccacaat 368  Q
    |||||||||||||| ||||||||||||| ||| |||||  | |||||||||||  |||| ||||||    
T  13043447 ttgggtgacatagaattgggtgacattggtgatattggcgatattggtcaatcgaaatgtcacaat 13043512  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Original strand, 12343106 - 12343134
Alignment:
Q  301 acttgggtgacatagagttgggtgacatt 329  Q
    |||||||||||||||||||||||||||||    
T  12343106 acttgggtgacatagagttgggtgacatt 12343134  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Original strand, 13766746 - 13766774
Alignment:
Q  303 ttgggtgacatagagttgggtgacattga 331  Q
    |||||||||||||||||||||||||||||    
T  13766746 ttgggtgacatagagttgggtgacattga 13766774  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 31654304 - 31654340
Alignment:
Q  294 gggtaacacttgggtgacatagagttgggtgacattg 330  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  31654304 gggtagcacttgggtgatatagagttgggtgacattg 31654340  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 63763 - 63792
Alignment:
Q  301 acttgggtgacatagagttgggtgacattg 330  Q
    ||||||||||||||||||||||||||||||    
T  63763 acttgggtgacatagagttgggtgacattg 63792  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 19125 - 19157
Alignment:
Q  307 gtgacatagagttgggtgacattgatgacattg 339  Q
    |||||||||||||||||||||||||||| ||||    
T  19125 gtgacatagagttgggtgacattgatgatattg 19157  T

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Target: scaffold0161 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Original strand, 27217 - 27245
Alignment:
Q  301 acttgggtgacatagagttgggtgacatt 329  Q
    |||||||||||||||||||||||||||||    
T  27217 acttgggtgacatagagttgggtgacatt 27245  T

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