View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14970_high_1 (Length: 352)
Name: NF14970_high_1
Description: NF14970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14970_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 4387865 - 4387538
Alignment:
| Q |
1 |
ttaattcattcgatgcctttgctaacataaagttatcatgctaattgattaacatacgtcaactaatacctagtatgtttggtttttatttggtagagct |
100 |
Q |
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| T |
4387865 |
ttaattcattcgatgcctttgctaacataaagttatcatgctaattgattaacatacgtcaactaatacctagtatgtttggtttttatttggtagagct |
4387766 |
T |
|
| Q |
101 |
cctaagtgtcccttcaaagagtaaaagtaaaaaacttatgcttataaacttataaacttaaatccaaaattgacactaataaacccctattgaaaagcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4387765 |
cctaagtgtcccttcaaagagtaaaagtaaaaaacttatgcttataaacttataaacttaaatccaaaattgacactaataaacccctattgaatagcat |
4387666 |
T |
|
| Q |
201 |
aaggttccaaaattaagggcgaaattttgatactctctacatcctagtatgagtgtcacatgttattgatttataaaaactaatgagaaattataatgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4387665 |
aaggttccaaaattaagggcgaaattttgatactctctacatcctagtatgagtgtcacatgttattgatttataaaaactaatgagaaattataatgaa |
4387566 |
T |
|
| Q |
301 |
agnnnnnnncaattttaccaaattagtc |
328 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
4387565 |
agaaaaaaacaattttaccaaattagtc |
4387538 |
T |
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