View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14970_high_2 (Length: 333)
Name: NF14970_high_2
Description: NF14970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14970_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 8358261 - 8357944
Alignment:
| Q |
1 |
atttttctatgttccacctcatcattcaacctcttcaccatcctactcatagtttacaaatcatttatcaatctaaaaacccctttcgccgccgcatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||| || ||||||| |
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| T |
8358261 |
atttttctatgttccacctcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaa |
8358162 |
T |
|
| Q |
101 |
gttgttcacatagtctttcccaattagttctattttttattctctttatgaacaaaccaactaaaccacctacaatacttggtgcagccactaacccaac |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358161 |
gttgttcacatagtctttcgcaattagttctattttttattctctttatgaacaaaccaactaaaccacctacaatacttggtgcagccactaacccaac |
8358062 |
T |
|
| Q |
201 |
aacactatgaaaagaaaccactaataaagcaataagaatagcagcatgtgatgtaataagagcaattcctccaactttcttgcaaacactaatcaatgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358061 |
aacactatgaaaagaaaccactaataaagcaataagaatagcagcatgtgatgtaacaagagcaattcctccaactttcttgcaaacactaatcaatgtt |
8357962 |
T |
|
| Q |
301 |
aatcttctttgaattttc |
318 |
Q |
| |
|
|||||||||||||||||| |
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| T |
8357961 |
aatcttctttgaattttc |
8357944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 28593312 - 28593642
Alignment:
| Q |
1 |
atttttctatgttccacctcatcattcaacctcttcaccatcctactcatagtttacaaatcatttatcaatctaaaaacccctttcgccgccgcatcaa |
100 |
Q |
| |
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||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| || || ||||||| |
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| T |
28593312 |
attttcctatgctccacttcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaaccccttttgcagcagcatcaa |
28593411 |
T |
|
| Q |
101 |
gttgttcacatagtctttcccaattag---------tt---ctattttttattctctttatgaacaaaccaactaaaccacctacaatacttggtgcagc |
188 |
Q |
| |
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||||||||||||||||||| |||| || || ||| |||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
28593412 |
gttgttcacatagtctttcacaataagaacttcttcttaacctaattttgattttctttatgaacaaaccaaccaaactacctacaatacttggtgcagc |
28593511 |
T |
|
| Q |
189 |
cactaacccaacaacactatgaaaagaaaccactaataaagcaataagaatagcagcatgtgatgtaataagagcaattcctccaactttcttgcaaaca |
288 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28593512 |
cactaaccctactacactatgaaaagaaaccactaataaagcaataagaatggcaccatgtgatgtaacaagagcaattcctccaactttcttgcaaacc |
28593611 |
T |
|
| Q |
289 |
ctaatcaatgttaatcttctttgaattttct |
319 |
Q |
| |
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|||||||||| |||||||||||||||||||| |
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|
| T |
28593612 |
ctaatcaatgctaatcttctttgaattttct |
28593642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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