View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14971_high_1 (Length: 380)
Name: NF14971_high_1
Description: NF14971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14971_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 35622116 - 35621756
Alignment:
| Q |
18 |
atgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattgtttcataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622116 |
atgataacattaacctagcttcaagtttaccaaaaccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattgtttcataa |
35622017 |
T |
|
| Q |
118 |
aaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622016 |
aaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttc |
35621917 |
T |
|
| Q |
218 |
aacatttatttggctgtagtttttagtgcttcaatggaaataccttcttgcgtagcaatgtacttcttggaaaactatagaagaaaactttcaattcttg |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35621916 |
aacatttatttggctgtagtttttagtgcttcaatggaaataccttcttgcgtagcaatatacttcttggaaaactatagaagaaaactttcaattcttg |
35621817 |
T |
|
| Q |
318 |
ttttctcaatcttaagtggaatttgttgtgtgatgtgtgttgtcgttgagaataatctacc |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
35621816 |
ttttctcaatcttaagtggaatttgttgtgtgatgtgtgttgtcgttgaaaataatgtacc |
35621756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 34263195 - 34262842
Alignment:
| Q |
18 |
atgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattgtttcataa |
117 |
Q |
| |
|
||||||||| ||| |||| ||| ||||||||||| || ||| |||||||||| || |||||||| ||||||||||||||||||| ||||| ||||||| |
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|
| T |
34263195 |
atgataacactaatctaggttcgagtttaccaaaaccacccacaaaagaaaaggttacaatttttcaacattactcttcaataggtgaattgattcataa |
34263096 |
T |
|
| Q |
118 |
aaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttc |
217 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||| |
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|
| T |
34263095 |
aagatgggctcttataagaataatagctgttatgattcttggaattggaattggaatggtttatcttggtatgccactagcagttggaaatttgggattc |
34262996 |
T |
|
| Q |
218 |
aacatttatttggctgtagtttttagtgcttcaatggaaataccttcttgcgtagcaatgtacttcttggaaaactatagaagaaaactttcaattcttg |
317 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||| || || ||||||| || ||||||||||||||||||||||||| ||||||||||| |
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| T |
34262995 |
aatatttatttggctgtggtttttagtgcttcaatggaaataccctcatgtgtagcaacatatttcttggaaaactatagaagaaaaccttcaattcttg |
34262896 |
T |
|
| Q |
318 |
ttttctcaatcttaagtggaatttgttgtgtgatgtgtgttgtcgttgagaata |
371 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
34262895 |
ttttctcaatcttaggtggaatttgttgtgtgatgtgtgctgttgttgagaata |
34262842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 14579987 - 14579649
Alignment:
| Q |
18 |
atgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattgtttcataa |
117 |
Q |
| |
|
|||||| | ||||| ||||||| | ||||||||| | ||| ||||||||||| ||||| ||||| ||| |||||| ||||||||| |||| |||||||| |
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|
| T |
14579987 |
atgatagcgttaacttagcttcgaatttaccaaaacttcccccaaaagaaaaagtttcattttttcaactttactcatcaataggagaattatttcataa |
14579888 |
T |
|
| Q |
118 |
aaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttc |
217 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
14579887 |
aagatgggctgttataagaatgatagctgttatgattcttggaattggacttggaatggtttattttggtatgccactagctgttggaaatttaggattc |
14579788 |
T |
|
| Q |
218 |
aacatttatttggctgtagtttttagtgcttcaatggaaataccttcttgcgtagcaatgtacttcttggaaaactatagaagaaaactttcaattcttg |
317 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| ||||||| || ||||||| || |||||||||||| ||||||||||| ||||||||||| |
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|
| T |
14579787 |
aacatttacttggctgtggtttttagtgcttcaatggaattaccttcctgtgtagcaacatatttcttggaaaaccttagaagaaaaccttcaattcttg |
14579688 |
T |
|
| Q |
318 |
ttttctcaatcttaagtggaatttgttgtgtgatgtgtg |
356 |
Q |
| |
|
| || || |||||| |||||||||||||||||||||||| |
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|
| T |
14579687 |
tgttttctatcttaggtggaatttgttgtgtgatgtgtg |
14579649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 14543600 - 14543938
Alignment:
| Q |
18 |
atgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattgtttcataa |
117 |
Q |
| |
|
|||||| | ||||| ||||||| | ||||||||| | ||| ||||||||||| ||||| ||||| ||| |||||| ||||||||| |||| |||||||| |
|
|
| T |
14543600 |
atgatagcgttaacttagcttcgaatttaccaaaacttcccccaaaagaaaaagtttcattttttcaactttactcatcaataggagaattatttcataa |
14543699 |
T |
|
| Q |
118 |
aaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttc |
217 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
14543700 |
aagatgggctgttataagaatgatagctgttatgattcttggaattggacttggaatggtttatttaggtatgccactagctgttggaaatttaggattc |
14543799 |
T |
|
| Q |
218 |
aacatttatttggctgtagtttttagtgcttcaatggaaataccttcttgcgtagcaatgtacttcttggaaaactatagaagaaaactttcaattcttg |
317 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||| ||||||| || ||||||| || |||||||||||| ||||||||||| ||||||||||| |
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|
| T |
14543800 |
aacatttaattggcagtggtttttagtgcttcaatggaattaccttcatgtgtagcaacatatttcttggaaaaccttagaagaaaaccttcaattcttg |
14543899 |
T |
|
| Q |
318 |
ttttctcaatcttaagtggaatttgttgtgtgatgtgtg |
356 |
Q |
| |
|
| || || |||||| |||||||||||||||||| ||||| |
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|
| T |
14543900 |
tgttttctatcttaggtggaatttgttgtgtgaagtgtg |
14543938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 147 - 267
Target Start/End: Original strand, 10404724 - 10404844
Alignment:
| Q |
147 |
ttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttcaacatttatttggctgtagtttttagtgc |
246 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||| |||||||||||| || |||||||| ||||| ||| ||||||| ||||| || || |||| ||| |
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|
| T |
10404724 |
ttatggttcttggtatgggaattggaatggtttattttggtatgccactcgccgttggaaacttaggattcgacatttacttggccgttgtgtttaatgc |
10404823 |
T |
|
| Q |
247 |
ttcaatggaaataccttcttg |
267 |
Q |
| |
|
| ||||||||||| ||||| |
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| T |
10404824 |
cttgatggaaataccgtcttg |
10404844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 37577694 - 37577599
Alignment:
| Q |
221 |
atttatttggctgtagtttttagtgcttcaatggaaataccttcttgcgtagcaatgtacttcttggaaaactatagaagaaaactttcaattctt |
316 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||||| || ||| || || ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37577694 |
atttatttggctgtggtttttaatgcttcaatgaaaatacctttatgtttagtaacatatttcttggaaaactatagaagaaaaccttcaattctt |
37577599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 134 - 267
Target Start/End: Original strand, 10378725 - 10378858
Alignment:
| Q |
134 |
agaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttcaacatttatttggctg |
233 |
Q |
| |
|
|||||||| || || ||| ||||| ||||||||||||||||||| |||| ||| ||||| |||| |||||||| ||||| || ||||||||||||||| |
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|
| T |
10378725 |
agaatgatggcggtaatggttcttggtattggaattggaatggtctattttggaatgcctttagccgttggaaacttaggttttgacatttatttggctg |
10378824 |
T |
|
| Q |
234 |
tagtttttagtgcttcaatggaaataccttcttg |
267 |
Q |
| |
|
| || || | || || ||||||||||| ||||| |
|
|
| T |
10378825 |
ttgtgttcaatggtttgatggaaataccgtcttg |
10378858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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