View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14971_high_2 (Length: 296)

Name: NF14971_high_2
Description: NF14971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14971_high_2
NF14971_high_2
[»] chr5 (4 HSPs)
chr5 (31-280)||(37230153-37230402)
chr5 (31-280)||(37237071-37237320)
chr5 (197-266)||(33596497-33596566)
chr5 (210-261)||(37309272-37309323)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 31 - 280
Target Start/End: Complemental strand, 37230402 - 37230153
Alignment:
Q  31 atctaactcacatacttatacaagtacttttgataagaatcaccaaatctcattaaacatttataatggaatttacctataatctacaaactgcggaatt 130  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37230402 atctaactcgcatacttatacaagtacttttgataagaatcaccaaatcgcattaaacatttataatggaatttaccaataatctacaaactgcggaatt 37230303  T
Q  131 tcagacttatcaaagttacaacggatgtgacagaagttcaaaccatctgtgccaaccacagttggcagaaaatgagaaaatacatacctcttcctggaat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37230302 tcagacttatcaaagttacaacggatgtgacagaagttcaaaccatctgtgccaaccacagttggcagaaaatgagaaaatacatacctcttcctggaat 37230203  T
Q  231 gaacactatcccacttcctttgctgaaattggcatctagattgaaatttt 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37230202 gaacactatcccacttcctttgctgaaattggcatcttgattgaaatttt 37230153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 31 - 280
Target Start/End: Complemental strand, 37237320 - 37237071
Alignment:
Q  31 atctaactcacatacttatacaagtacttttgataagaatcaccaaatctcattaaacatttataatggaatttacctataatctacaaactgcggaatt 130  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  37237320 atctaactcgcatacttatacaagtacttttgataagaatcaccaaatcacattaaacatttataatggaatttaccagtaatctacaaactgcggaatt 37237221  T
Q  131 tcagacttatcaaagttacaacggatgtgacagaagttcaaaccatctgtgccaaccacagttggcagaaaatgagaaaatacatacctcttcctggaat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37237220 tcagacttatcaaagttacaacggatgtgacagaagttcaaaccatctgtgccaaccacagttggcagaaaatgagaaaatacatacctcttcctggaat 37237121  T
Q  231 gaacactatcccacttcctttgctgaaattggcatctagattgaaatttt 280  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  37237120 gaacactatcccacttcctatgctgaaattggcatcttgattgaaatttt 37237071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 33596497 - 33596566
Alignment:
Q  197 agaaaatgagaaaatacatacctcttcctggaatgaacactatcccacttcctttgctgaaattggcatc 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33596497 agaaaatgagaaaatacatacctcttcctggaatgaacactatcccacttcctttgctgaaattagcatc 33596566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 37309323 - 37309272
Alignment:
Q  210 atacatacctcttcctggaatgaacactatcccacttcctttgctgaaattg 261  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37309323 atacatacctcttcctggaatgaacactatcccacttccattgctgaaattg 37309272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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