View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14971_low_1 (Length: 888)
Name: NF14971_low_1
Description: NF14971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14971_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 772; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 772; E-Value: 0
Query Start/End: Original strand, 19 - 839
Target Start/End: Original strand, 35557622 - 35558442
Alignment:
| Q |
19 |
acttaagcatacatgatattttagttgtagcatacatgtctcgcgtatgtagcttggttggcgagcgaaaaataccaacagaatctctagctactaacat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35557622 |
acttaagcatacatgatattttagttgtagcatacatgtctcgcgtatgtagcttggttggcgagcgaaaaataccaacagaatctctaactactaacat |
35557721 |
T |
|
| Q |
119 |
tttcgnnnnnnncagtaacacacaaagattaaaatgcagtaaattcccctgtgaaaaatgaaattgcaaatgatcaattttactggctattagtgtttca |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35557722 |
tttccaaaaaaacagtaacacacaaagattaaaatgcagtaaattcccctgtgaaaaatgaaattgcaaatgatcaattttactggctattagtgtttca |
35557821 |
T |
|
| Q |
219 |
caaaattttacactacagcctattgttagatcacattcctaaatctttacatacaccccaagagtatacccaaattaaaattcatcacaaagaatcaata |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35557822 |
caaaattttacactacagcctattgttagatcacattcctaaatctttacatacaccccaagagtatacccaaattaaaattcatcaaaaagaatcaata |
35557921 |
T |
|
| Q |
319 |
ataatcaagtaaaattttcaatatcagtcagatccaatagagattgtagcactagaaatgctaccatgactactactatcacaaagagtgaaagcacgtt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35557922 |
ataatcaagtaaaattttcaatatcagtcagatccaatagagattgtagcactagaaatgctaccatgactactactatcacaaagagtgaaagcacgtt |
35558021 |
T |
|
| Q |
419 |
ccaaattagccacaatatcacttattgttggcctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagctccactgcttctgtttc |
518 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35558022 |
ccaaattagccacaatatcacttattgttggtctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagctccactgcttctgtttc |
35558121 |
T |
|
| Q |
519 |
attcatctctggtggttcaaccctttgatccaaaattttcatcgattctcctttcataattataggcactgcaaaatctactatactaattggtgttcct |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35558122 |
attcatctctggtggttcaaccctttgatccaaaattttcatcaattctcctttcataattataggcactgcaaaatctactatactaattggtgttcct |
35558221 |
T |
|
| Q |
619 |
ccattttcatcattcttgaatatagctctttttcctgttaatagctcaagtaaaactactcctagaccataaacatcactctttgctgttaatacattta |
718 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35558222 |
ccattttcatcattcttgaatatagctctttttcctgttaatagctcaagtaaaactactcctagaccataaacatcactctttgctgttaatacattta |
35558321 |
T |
|
| Q |
719 |
gaccataatattcaggatcgatgtatccaaccgttccggctgcttttgttggtctataatcatgatcagaatccggactcaacattgacaatccgaaatc |
818 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35558322 |
gaccataatattcaggatcgatgtatccaaccgttccggctgcttttgttggtcgataatcatgatcagaatccggactcaacattgacaatccgaaatc |
35558421 |
T |
|
| Q |
819 |
agacactctagccgtccaatc |
839 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
35558422 |
agacactctagctgtccaatc |
35558442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 429 - 501
Target Start/End: Original strand, 35555322 - 35555394
Alignment:
| Q |
429 |
cacaatatcacttattgttggcctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagc |
501 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35555322 |
cacaatgtcacttattgttggtctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagc |
35555394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 242 - 379
Target Start/End: Original strand, 35555192 - 35555320
Alignment:
| Q |
242 |
tgttagatcacattcctaaatctttacatacaccccaagagtatacccaaattaaaattcatcacaaagaatcaataataatcaagtaaaattttcaata |
341 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||| ||||| ||| ||| ||||| |
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| T |
35555192 |
tgttggatcacattcctaaatctttacat----cccaagagtataccca---taaaattcatcaacaagaatcgataaaaatca--taacattatcaatg |
35555282 |
T |
|
| Q |
342 |
tcagtcagatccaatagagattgtagcactagaaatgc |
379 |
Q |
| |
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||||||||||||||| ||||||||| ||| |||||||| |
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| T |
35555283 |
tcagtcagatccaatcgagattgtaacacaagaaatgc |
35555320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 582 - 837
Target Start/End: Original strand, 31754979 - 31755234
Alignment:
| Q |
582 |
aggcactgcaaaatctactatactaattggtgttcctccattttcatcattcttgaatatagctctttttcctgttaatagctcaagtaaaactactcct |
681 |
Q |
| |
|
||||||||||||||| |||||||| | || ||||||||| |||| ||||| ||||||||||||||||||||||| | || ||||| || ||||| |
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| T |
31754979 |
aggcactgcaaaatcaactatactcaaaggatttcctccatcttcaccattccgaaatatagctctttttcctgttaacaattccagtaatacaactcca |
31755078 |
T |
|
| Q |
682 |
agaccataaacatcactctttgctgttaatacatttagaccataatattcaggatcgatgtatccaaccgttccggctgcttttgttggtctataatcat |
781 |
Q |
| |
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|| |||||||||||||||||||||||||||| ||| | |||||| || || |||||||| || ||||| ||||| |||| |||||||||| | |||||| |
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| T |
31755079 |
agtccataaacatcactctttgctgttaataaattcaaaccatagtactcgggatcgatataaccaactgttcctgctgtttttgttggtttgtaatcaa |
31755178 |
T |
|
| Q |
782 |
gatcagaatccggactcaacattgacaatccgaaatcagacactctagccgtccaa |
837 |
Q |
| |
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|||||| || ||||||| || ||| ||||| |||||||| ||||| || |||||| |
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|
| T |
31755179 |
tatcagattctggactcatcaatgataatccaaaatcagatactcttgctgtccaa |
31755234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 679 - 765
Target Start/End: Original strand, 25740146 - 25740232
Alignment:
| Q |
679 |
cctagaccataaacatcactctttgctgttaatacatttagaccataatattcaggatcgatgtatccaaccgttccggctgctttt |
765 |
Q |
| |
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|||| ||||||||||||||| |||| |||||| ||||||| | |||| || |||||||| ||||| ||||| |||||| | |||||| |
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| T |
25740146 |
cctaaaccataaacatcactttttgttgttaaaacatttaaaacatagtactcaggatctatgtaaccaacggttccgaccgctttt |
25740232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 479
Target Start/End: Original strand, 31754808 - 31754870
Alignment:
| Q |
417 |
ttccaaattagccacaatatcacttattgttggcctatcttttccttccaaatgcacacaatg |
479 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||||||| |||||||||| ||||||||| |
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|
| T |
31754808 |
ttccaaattagccacaatatcagccatagttggtctatctttcccttccaaattcacacaatg |
31754870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 491
Target Start/End: Original strand, 25739918 - 25739961
Alignment:
| Q |
448 |
ggcctatcttttccttccaaatgcacacaatgcattgcagtata |
491 |
Q |
| |
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||||| |||||||||||||||| |||||||||||| |||||||| |
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|
| T |
25739918 |
ggcctttcttttccttccaaattcacacaatgcatagcagtata |
25739961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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