View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14971_low_11 (Length: 237)
Name: NF14971_low_11
Description: NF14971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14971_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11025187 - 11024967
Alignment:
| Q |
1 |
gaagcgtactccatagagttaacacaagggtgaacttggaatttaatgagggagttcattattgtggattctattatttttctcccttcattcatttgta |
100 |
Q |
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| T |
11025187 |
gaagcgtactccatagagttaacacaagggtgaacttggaatttaatgagggagttcattattgtggattctattatttttctcccttcattcatttgta |
11025088 |
T |
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| Q |
101 |
tgcttgtattacacataaacaatgagaagaaagaggtgggttttgttttggtgaaatccatttttcatttttattcttatgtaagagatcaataattacc |
200 |
Q |
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| T |
11025087 |
tgcttgtattacacataaacaatgagaagaaagaggtgggttttgttttggtgaaatccatttttcatttttattcttatgtaagagatcaataattacc |
11024988 |
T |
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| Q |
201 |
aaatttcatatacgatagtaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
11024987 |
aaatttcatatacgatagtaa |
11024967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 11038344 - 11038270
Alignment:
| Q |
134 |
aggtgggttttgttttggtgaaatccatttttcatttttattcttatgtaagagatcaataattaccaaatttca |
208 |
Q |
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| T |
11038344 |
aggtgggttttgttttggggaaatccattttttatttttggttttatgtaagagatcaataattaccaaatttca |
11038270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11038435 - 11038389
Alignment:
| Q |
1 |
gaagcgtactccatagagttaacacaagggtgaacttggaatttaat |
47 |
Q |
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| T |
11038435 |
gaagagtactccatagagttaacacaagggtgaacttggaatttaat |
11038389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 10892013 - 10892070
Alignment:
| Q |
122 |
atgagaagaaagaggtgggttttgttttggtgaaatccatttttcatttttattcttat |
180 |
Q |
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| T |
10892013 |
atgaggagaaagtggtgggttttgttttgg-gaaatccattttttatttttatttttat |
10892070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 10892076 - 10892124
Alignment:
| Q |
162 |
ttttcatttttattcttatgtaagagatcaataattaccaaatttcata |
210 |
Q |
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|||| ||||||||| ||||||||||| | ||||||| |||||||||||| |
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| T |
10892076 |
tttttatttttatttttatgtaagagcttaataattgccaaatttcata |
10892124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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