View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14971_low_13 (Length: 225)

Name: NF14971_low_13
Description: NF14971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14971_low_13
NF14971_low_13
[»] chr4 (2 HSPs)
chr4 (21-204)||(55335915-55336098)
chr4 (54-157)||(55330516-55330619)
[»] chr2 (7 HSPs)
chr2 (33-157)||(8376194-8376318)
chr2 (33-157)||(8405568-8405692)
chr2 (33-157)||(8395880-8396004)
chr2 (33-157)||(8430839-8430963)
chr2 (35-157)||(8411690-8411812)
chr2 (35-157)||(8433788-8433910)
chr2 (105-157)||(8416844-8416896)
[»] scaffold1738 (1 HSPs)
scaffold1738 (33-157)||(26-150)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 55335915 - 55336098
Alignment:
Q  21 tctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaa 120  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55335915 tctatagaaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaa 55336014  T
Q  121 atatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctcccaacatcttaaagaatccac 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  55336015 atatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctccaaacatcttaaaaaatccac 55336098  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 55330516 - 55330619
Alignment:
Q  54 gattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctt 153  Q
    |||||||||||||| | ||| | |||||||||| ||||||| |||||||| ||||||||||||||||||| ||| |||||||||||  | || |||||||    
T  55330516 gattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattttcatttcaaataactctccattttctctcatctcaaaatctt 55330615  T
Q  154 tctc 157  Q
    ||||    
T  55330616 tctc 55330619  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 8376318 - 8376194
Alignment:
Q  33 ccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccat 132  Q
    |||||||||| ||| | ||| |||||||| |||||||  || ||||| || ||||||||||| ||   ||| ||||||||||||||||||| ||| ||||    
T  8376318 ccttccatgcgacaagaagctgattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccat 8376219  T
Q  133 tttctcttttttccaaatctttctc 157  Q
    |||||||||| || |||||||||||    
T  8376218 tttctcttttctctaaatctttctc 8376194  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 8405568 - 8405692
Alignment:
Q  33 ccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccat 132  Q
    |||||||||| | | | ||| |||||||| |||||||  || |||||||| ||||||||||| ||   ||| ||||||||||||||||||| ||| ||||    
T  8405568 ccttccatgcgataagaagctgattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaagccattttcatttcaaatagctctccat 8405667  T
Q  133 tttctcttttttccaaatctttctc 157  Q
    |||||||||| || |||||||||||    
T  8405668 tttctcttttctctaaatctttctc 8405692  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 8396004 - 8395880
Alignment:
Q  33 ccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccat 132  Q
    |||||||||| | | | ||| |||||||| |||||||  || ||||| || ||||||||||| ||   ||| ||||||||||||||||||| ||| ||||    
T  8396004 ccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccat 8395905  T
Q  133 tttctcttttttccaaatctttctc 157  Q
    |||||||||| || |||||||||||    
T  8395904 tttctcttttctctaaatctttctc 8395880  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 8430839 - 8430963
Alignment:
Q  33 ccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccat 132  Q
    |||||||||| | | | ||| |||||||| |||||||  |||||||| || |||||| |||| ||   ||| ||||| ||||||||||||| ||| ||||    
T  8430839 ccttccatgcgataagaagctgattttgatgcaagttcccttagctctgatacactttttcccaattgcaaagccatcttcatttcaaatagctctccat 8430938  T
Q  133 tttctcttttttccaaatctttctc 157  Q
    |||||||||| || |||||||||||    
T  8430939 tttctcttttctctaaatctttctc 8430963  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 8411690 - 8411812
Alignment:
Q  35 ttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccattt 134  Q
    |||||||| ||| | ||| |||||||| |||||||  || ||||| |  ||||||||||| ||   ||| |||||||||| |||||||| ||| ||||||    
T  8411690 ttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattt 8411789  T
Q  135 tctcttttttccaaatctttctc 157  Q
    |||||||| || |||||||||||    
T  8411790 tctcttttctctaaatctttctc 8411812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 8433788 - 8433910
Alignment:
Q  35 ttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccattt 134  Q
    |||||||| ||| | ||| |||||||| |||||||  || ||||| |  ||||||||||| ||   ||| |||||||||| |||||||| ||| ||||||    
T  8433788 ttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattt 8433887  T
Q  135 tctcttttttccaaatctttctc 157  Q
    |||||||| || |||||||||||    
T  8433888 tctcttttctctaaatctttctc 8433910  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 8416844 - 8416896
Alignment:
Q  105 gccattttcatttcaaatatctcaccattttctcttttttccaaatctttctc 157  Q
    ||||||||||||||||||| ||| |||||||||||||| || |||||||||||    
T  8416844 gccattttcatttcaaatagctctccattttctcttttctctaaatctttctc 8416896  T

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Target: scaffold1738 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 150 - 26
Alignment:
Q  33 ccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccat 132  Q
    ||||| |||| ||| | ||| |||||||| |||||||  || ||||| || ||||||||||| ||   ||| ||||||||||||||||||| ||| ||||    
T  150 ccttcgatgcgacaagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccat 51  T
Q  133 tttctcttttttccaaatctttctc 157  Q
    |||||||||| || |||||||||||    
T  50 tttctcttttctctaaatctttctc 26  T

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