View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14971_low_2 (Length: 580)
Name: NF14971_low_2
Description: NF14971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14971_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 38 - 567
Target Start/End: Complemental strand, 40183401 - 40182872
Alignment:
| Q |
38 |
caaaaactctaccatccgttgcttttccaccttgagaagctcttgctctctccgatatagcttccttaaaatccttataaagcttccaatcataatcact |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40183401 |
caaaaactctaccatccgttgcttttccaccttgagaagctcttgctctctccgatatagcttccttaaaatccttataaagcttccaatcataatcact |
40183302 |
T |
|
| Q |
138 |
taatttctccaaattagctttccctaaatttgatctaatggatccaggcataaccaaaacaacatttattccaaatggcttcaattccaaccgcaaacta |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
40183301 |
taatttctccaaattagctttccctaaatttgatctaatggatccaggcataaccaaaacaacattgatcccaaatggcttcaattctaaccgcaaacta |
40183202 |
T |
|
| Q |
238 |
tttgacattgcatgaatagcacttttactagcacaatatgaccctgcccatggtgttgaaatatttccaactacacttccaacattaactatggttccac |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40183201 |
tttgacattgcatgaatagcacttttactagcacaatatgaccctgcccatggtgttgaaatattcccaactacacttccaacattaactatggttccac |
40183102 |
T |
|
| Q |
338 |
nnnnnnncagagccatgtgaggcacaacttgttgcaccattcttagttgtcccaacgtgttaatttccaatgtttttctaatagtgtctagtggtaattc |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40183101 |
tttttttcagagccatgtgaggcacaacttgttgcaccattcttagttgtcccaacgtgttaatttccaatgtttttctaatagtgtctagtggtaattc |
40183002 |
T |
|
| Q |
438 |
ggctaatggacccgtgctacctattccggcgttattaactagaatgtcgatacgtccgtattttgatataatagtgtccacggctgaagtagcgctttga |
537 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40183001 |
ggctaatggacctgtgctacctattccggcgttattaactagaatgtcgatacgtccgtattttgatataatagtgtccacggctgaagtagcgctttga |
40182902 |
T |
|
| Q |
538 |
tcagatgaaacgtcaagttcgagtgtctct |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40182901 |
tcagatgaaacgtcaagttcgagtgtctct |
40182872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University