View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14972_high_2 (Length: 363)
Name: NF14972_high_2
Description: NF14972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14972_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 48 - 284
Target Start/End: Original strand, 36152209 - 36152440
Alignment:
| Q |
48 |
ttttttaatggtttatataatcaaatttgtacatcacgtacatagttggtttaggtgtctttttcctacggacactgccagatatatgcattgccaagta |
147 |
Q |
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| T |
36152209 |
ttttttaatggtttacataatcaa-tttgtacatcacgtacatagttggtttaggtgtctttttcctacggacactgccagatatatgcattgccaagta |
36152307 |
T |
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| Q |
148 |
ccacaaggaagtaggtc-taggtcctaaatgttagtatattgtggacttaattacctgaaccacatgtgaaggaacttccatactctcaaatttatttag |
246 |
Q |
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| T |
36152308 |
ccacaaggaagtaggtccta-----ttaatgttagtatattgtggacttaattacctgaaccacatgtgaaggaacttccatactctcaaatttatttag |
36152402 |
T |
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| Q |
247 |
tggtatagctttgggtctatatttccttttccacgttg |
284 |
Q |
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| T |
36152403 |
tggtatagctttgggtctatatttccttttccacgttg |
36152440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 36152437 - 36152479
Alignment:
| Q |
313 |
gttgtctttcaaattaat---tattggaattattcttatctgt |
352 |
Q |
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| T |
36152437 |
gttgtctttcaaattaataattattggaattattcttatctgt |
36152479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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