View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14972_high_3 (Length: 325)
Name: NF14972_high_3
Description: NF14972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14972_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 11213852 - 11213531
Alignment:
| Q |
2 |
acctgtccagataaactcagcatgcactaactttgccttattgatattcatattcttctaccattttttcaagcaaaatgccaacaactcctttgatttt |
101 |
Q |
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| T |
11213852 |
acctgtccagataaactcagcatgcactaactttgccttattgatattcatattcttctaccattttttcaagcaaaatgccaacaactcctttgattct |
11213753 |
T |
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| Q |
102 |
aactgcagtttgacccaagttctcggtggctgcaagtaactttcacactctggggaatgaaaaagcaccaaaagcttcagtaa-ccttccgtgatataaa |
200 |
Q |
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| T |
11213752 |
aactgcagtttgacctaagttctcggtggctgcaagtaactttcacactcaggggaatgaacaagcaccaaaagcatcagtaacccttccgtgatataaa |
11213653 |
T |
|
| Q |
201 |
cttctgagcgcaaacacttcacacacatattggctgcat----ttgcatacaaatcctggtgcattctctagagcaacagttcctgttaatcttttagca |
296 |
Q |
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| T |
11213652 |
cttctgagcgcaaacacttcacacacatattggctgcatttggttgcatacaaatcctggtgcattctctagagcaacagttcctgttaatcttttagcg |
11213553 |
T |
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| Q |
297 |
atggtctctgcaagtattatct |
318 |
Q |
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| T |
11213552 |
atggtgtctgcaagtgttatct |
11213531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 43995664 - 43995471
Alignment:
| Q |
39 |
ttattgatattcatattcttctaccattttttcaagcaaaatgccaacaactcctttgattttaactgcagtttgacccaagttctcggtggctgcaagt |
138 |
Q |
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| T |
43995664 |
ttattgacattcatattcttttgcaatcttttcaagcaaaatgccaacagctcctttgtttctaattgtagtttgacccaagttctcggtggctgcaagt |
43995565 |
T |
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| Q |
139 |
aactttcacactctggggaatgaaaaagcaccaaaagcttcagtaa-ccttccgtgatataaacttctgagcgcaaacacttcacacacatatt |
231 |
Q |
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| T |
43995564 |
agctttggcactcggggcaatgcacaatcacatggagcttcagtaagccttctgtaatatcaacttctgagcacaaacacttcaaacacatatt |
43995471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 29271098 - 29270859
Alignment:
| Q |
4 |
ctgtccagataaactcagcatgcactaactttgccttattgatattcatattcttctaccattttttcaagcaaaatgccaacaactcctttgattttaa |
103 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||| ||| |
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| T |
29271098 |
ctgtccaaataaactcagcatttactaactttgccttattgatattcatattcttctgcaattttttcaagcaaaatgtcaacagctcctttgattctaa |
29270999 |
T |
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| Q |
104 |
ctgcagtttgacccaagttctcggtggctgcaagtaactttcacactctggggaatgaaaaagcaccaaaagcttcagtaa-ccttccgtgatataaact |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| | |||||||||| ||||||||||||| |||| |
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| T |
29270998 |
ctgcagtttgacccaagttctcggtggctgcaagtaactttcacactcagggcaatgaacaagcaccagacgcttcagtaacccttccgtgatatcaact |
29270899 |
T |
|
| Q |
203 |
tctgagcgcaaacacttcacacacatattggctgcatttg |
242 |
Q |
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| T |
29270898 |
tctgagcgcaaacacttcacacacatattggctgcatttg |
29270859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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