View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14972_high_4 (Length: 320)
Name: NF14972_high_4
Description: NF14972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14972_high_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 152 - 320
Target Start/End: Complemental strand, 5853658 - 5853490
Alignment:
| Q |
152 |
aggtccaacacttgacgttgattggcgcaacaatgtatcgtttgcatcaagctccactgacaccatgatacatgtttgcaagattggcgataaccaccca |
251 |
Q |
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| T |
5853658 |
aggtccaacacttgacgttgattggcgtaacaatgtatcgtttgcatcaagctccactgacaccatgatacatgtttgcaagattggcgataaccaccca |
5853559 |
T |
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| Q |
252 |
ataaaaacttttgaagggcacaaggtttatacacctaccttgttttgaatatgctttgcactggaacac |
320 |
Q |
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| T |
5853558 |
ataaaaacttttgaagggcaccaggtttatacacctaccttgttttgaatacgctttgcactggaacac |
5853490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 152 - 301
Target Start/End: Complemental strand, 5869644 - 5869495
Alignment:
| Q |
152 |
aggtccaacacttgacgttgattggcgcaacaatgtatcgtttgcatcaagctccactgacaccatgatacatgtttgcaagattggcgataaccaccca |
251 |
Q |
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| T |
5869644 |
aggttcaacactcgacgttgattggcgcaataatgtgtcatttgcatcaagctccaatgacaccatgatacatgtttgcaagattggcgaaaaccaccca |
5869545 |
T |
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| Q |
252 |
ataaaaacttttgaagggcacaaggtttatacacctaccttgttttgaat |
301 |
Q |
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| T |
5869544 |
gtaaaaacttttgccgggcaccaggtttatacacctaacttgttttgaat |
5869495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 5853800 - 5853691
Alignment:
| Q |
10 |
agcagagaaatggaaacaacaatttgcttttcataaaggtaannnnnnnacaataatattctctctaaaagagaactcttggtgaga-aaaacatgttta |
108 |
Q |
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| T |
5853800 |
agcagagaaatggaaacaacaatttgcttttcataaaggtaatttttttacaataatattctctctaaaagagaactcttggtgagaaaaaacatgttta |
5853701 |
T |
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| Q |
109 |
tgaacttcta |
118 |
Q |
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| T |
5853700 |
tgaacttcta |
5853691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 39620127 - 39620239
Alignment:
| Q |
152 |
aggtccaacacttgacgttgattggcgcaacaatgtatcgtttgcatcaagctccactgacaccatgatacatgtttgcaagattggcgataaccaccca |
251 |
Q |
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| T |
39620127 |
aggtccaacacttgatgttgactggcgcaccaatacgtctttcgcctcaagttctacagacaatatgatatatgtctgcaagattggtgaaaaccaccct |
39620226 |
T |
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| Q |
252 |
ataaaaacttttg |
264 |
Q |
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| T |
39620227 |
acacaaacttttg |
39620239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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